Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20586
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   125   4e-30
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   125   4e-30
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    29   0.66 
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    27   1.5  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   2.0  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   4.7  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   8.1  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  125 bits (302), Expect = 4e-30
 Identities = 56/85 (65%), Positives = 76/85 (89%)
 Frame = +3

Query: 255 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 434
           +LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A+ MR +S
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 435 MARYLSGSVKEILGTAQSVGCTVEG 509
           +A+ LSG+VKEILGTA SVGCTV+G
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDG 145



 Score =  106 bits (254), Expect = 3e-24
 Identities = 46/60 (76%), Positives = 53/60 (88%)
 Frame = +1

Query: 76  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 255
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  125 bits (302), Expect = 4e-30
 Identities = 56/85 (65%), Positives = 76/85 (89%)
 Frame = +3

Query: 255 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 434
           +LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A+ MR +S
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 435 MARYLSGSVKEILGTAQSVGCTVEG 509
           +A+ LSG+VKEILGTA SVGCTV+G
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDG 145



 Score =  106 bits (254), Expect = 3e-24
 Identities = 46/60 (76%), Positives = 53/60 (88%)
 Frame = +1

Query: 76  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 255
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 478  VPRISFTEPERYRAIDLFLMIFAIPI-TSSREMLPL 374
            V R+  ++PE     DLFL I A+ + TSS+ +LPL
Sbjct: 1475 VKRLITSDPEGVLKKDLFLFIRALALRTSSKHLLPL 1510


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/72 (23%), Positives = 30/72 (41%)
 Frame = +3

Query: 255 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 434
           Q ++ N +    V  ++  L    LKE  +D++K ++       S   +   A+  RNR 
Sbjct: 27  QASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKRRNRK 86

Query: 435 MARYLSGSVKEI 470
               L  +V  I
Sbjct: 87  ARENLKVNVSSI 98


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 549 TPLLMSSIRSCGGLPPQYIQLTVLCQESLLLSQKGTGPL 433
           TP+ M    +CG +P    +L V   +   + +KGT PL
Sbjct: 440 TPIPMVHCETCGAVPVPESELPVKLPDLDKIYEKGTSPL 478


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 508 PSTVHPTDCAVPRISFTEPERYRAIDLFLMIFAIPITSSREMLPLCLIF 362
           P+  +P   + PR   T  +R   + + +     P TSSR  LPL +++
Sbjct: 213 PTESNPMFLSTPRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMY 261


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 155 DDVAPTSPPTHRKFTILI 102
           D++A T PP HRK  IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,506
Number of Sequences: 5004
Number of extensions: 51587
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)