Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20586
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1026 + 30214437-30214937                                        137   5e-33
02_05_0416 + 28791512-28792012                                        134   6e-32
03_06_0776 - 36176390-36177589                                         29   3.6  
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545...    28   6.3  
07_03_0574 - 19629875-19631032                                         27   8.3  
07_03_0313 + 16620817-16621515                                         27   8.3  
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488...    27   8.3  

>04_04_1026 + 30214437-30214937
          Length = 166

 Score =  137 bits (332), Expect = 5e-33
 Identities = 65/85 (76%), Positives = 79/85 (92%)
 Frame = +3

Query: 255 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 434
           +LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA+IMRNRS
Sbjct: 62  KLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNRS 121

Query: 435 MARYLSGSVKEILGTAQSVGCTVEG 509
           MA+ ++G+VKEILGT  SVGCTV+G
Sbjct: 122 MAKEMAGTVKEILGTCVSVGCTVDG 146



 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 43/61 (70%), Positives = 51/61 (83%), Gaps = 1/61 (1%)
 Frame = +1

Query: 76  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 252
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 253 V 255
           V
Sbjct: 61  V 61


>02_05_0416 + 28791512-28792012
          Length = 166

 Score =  134 bits (323), Expect = 6e-32
 Identities = 63/85 (74%), Positives = 78/85 (91%)
 Frame = +3

Query: 255 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 434
           +LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA++MR RS
Sbjct: 62  KLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARVMRPRS 121

Query: 435 MARYLSGSVKEILGTAQSVGCTVEG 509
           MA+ ++G+VKEILGT  SVGCTV+G
Sbjct: 122 MAKEMAGTVKEILGTCVSVGCTVDG 146



 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 43/61 (70%), Positives = 51/61 (83%), Gaps = 1/61 (1%)
 Frame = +1

Query: 76  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 252
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 253 V 255
           V
Sbjct: 61  V 61


>03_06_0776 - 36176390-36177589
          Length = 399

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 357 QKNIKHNGNISLEDVIGIAKIMRNRSMARY 446
           +K+I++ G++ LE    + K+M +RSM RY
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRY 142


>11_01_0669 -
           5454116-5454153,5454569-5454770,5454865-5455029,
           5455278-5456183
          Length = 436

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 73  KMPPK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 201
           K+P + F  N +KIV ++C G EV         +G  G+  +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412


>07_03_0574 - 19629875-19631032
          Length = 385

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 409 IPITSSREMLPLCLIFFCFLRSRG-GSLRALMIRAAAEGTTAIW 281
           +P     E++P C ++F F R+ G  SL A  + AA      +W
Sbjct: 247 LPFAGKAELVPGCNLWFGFSRADGSSSLCAADLAAAPHRACGVW 290


>07_03_0313 + 16620817-16621515
          Length = 232

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 239 PFQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRKFTILI 102
           PF     +A++      D     +LGAK D+   S P H K  +L+
Sbjct: 15  PFGQRCRIALAEKKLPYDYSEQELLGAKSDLLLRSNPIHAKVPVLL 60


>04_04_1551 -
           34348110-34348225,34348468-34348606,34348658-34348896,
           34349042-34349140,34349207-34350188,34350737-34350832,
           34350936-34351064,34351253-34351332,34351420-34351661,
           34351743-34352692
          Length = 1023

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 115 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 216
           N +C G E G  S  AP++ PLG+ PK  G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,140,706
Number of Sequences: 37544
Number of extensions: 372350
Number of successful extensions: 1063
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)