Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20586
(586 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.) 142 2e-34
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_48343| Best HMM Match : CBF (HMM E-Value=1.3) 28 6.4
SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_48085| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_44505| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_6877| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36) 27 8.5
SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05) 27 8.5
>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 142 bits (344), Expect = 2e-34
Identities = 65/84 (77%), Positives = 79/84 (94%)
Frame = +3
Query: 258 LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSM 437
LT+QNRQA+++VVPSA++LII+ALKEPPRDRKK KNIKHNGNI+L+DV +AK+MR RSM
Sbjct: 62 LTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITLDDVTNVAKVMRPRSM 121
Query: 438 ARYLSGSVKEILGTAQSVGCTVEG 509
AR+LSG+VKEILGT QSVGCTV+G
Sbjct: 122 ARHLSGTVKEILGTCQSVGCTVDG 145
Score = 118 bits (285), Expect = 3e-27
Identities = 54/60 (90%), Positives = 56/60 (93%)
Frame = +1
Query: 76 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 255
MPPKFDPNEI+ V LRC GGEVGAT+SLAPKIGPLGLSPKKVGDDIAKAT DWKGLKITV
Sbjct: 1 MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQDWKGLKITV 60
>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4554
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = -3
Query: 323 SDDKGCCRGNNSYLGLSVLNCQLTVILRPFQSLVALAMSSPTFLGDRPRGPILGAKDDVA 144
SD+K C R S L + LT++ P + S TF +P GP+ G K DVA
Sbjct: 924 SDEKRCIRAFLSSLRNPSDDEVLTLMALPIFEAI-----SGTFTAVQPDGPLRGEKLDVA 978
Query: 143 P 141
P
Sbjct: 979 P 979
>SB_48343| Best HMM Match : CBF (HMM E-Value=1.3)
Length = 669
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 360 KNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQ--SVGCTVEGGRHMILLM 533
+ I+ + SL+ ++GIA+++RN MA Y+ + +LGT+ VG R+ ++ M
Sbjct: 39 EKIERHKKTSLQGLMGIAQMIRN--MAGYVDDLWEILLGTSTPLPVGVLTTEERNALVKM 96
Query: 534 T 536
T
Sbjct: 97 T 97
>SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 491
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 172 GPLGLSPKKVGDDIAKATSDWKG 240
GPLG+ +++ D ++SDW G
Sbjct: 337 GPLGMEDRRIQDSQINSSSDWDG 359
>SB_48085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/82 (18%), Positives = 34/82 (41%)
Frame = +3
Query: 267 QNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARY 446
Q ++ V A +++ + P+ + KN+ H + D + R+ + +
Sbjct: 74 QKMDTRVIAVLFVAIMVLSSTNALPKQKGSYKNMNHADFLKGLDRASSKRDCRDSHWSCF 133
Query: 447 LSGSVKEILGTAQSVGCTVEGG 512
+ ++I TAQ+ C + G
Sbjct: 134 FQSNYEDICSTAQAEECALSCG 155
>SB_44505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -3
Query: 239 PFQSLVALAMSS--PTFLGDRPRGPILGAKDDVAPTSP 132
PF +L+ SS F+ DRPRGP G D + P
Sbjct: 360 PFNALIVGPTSSGKTRFIVDRPRGPFRGKFDYIVLVCP 397
>SB_6877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -3
Query: 272 VLNCQLTVILRPFQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPT 126
V +C T+++RP +++ A ++PT RGP + + + PPT
Sbjct: 103 VSSCLATLLVRPLETIPAPTPTTPTSPATPARGPPI--RTPIPLKEPPT 149
>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
Length = 646
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 94 PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVG 204
P+ +L+C G E TSS+ P +G LG K G
Sbjct: 597 PSMTNTTSLKCQGDEKSGTSSITP-LGSLGTYDKSHG 632
>SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)
Length = 302
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 273 RQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKH 374
RQ + +PSA IR +E PR +K N+KH
Sbjct: 107 RQVEPLPLPSALKEWIREYEEEPRFDRKLTNLKH 140
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,133,526
Number of Sequences: 59808
Number of extensions: 406069
Number of successful extensions: 1237
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -