Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20586
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...   132   2e-31
Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical p...    52   3e-07
Z81042-5|CAD44090.1|  331|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z81042-4|CAB02796.1|  272|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z81476-1|CAB03921.2|  431|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine re...    28   4.2  
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    28   5.6  
AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine r...    27   7.4  
Z82259-1|CAB05126.3|  437|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AY305849-1|AAR11993.1|  437|Caenorhabditis elegans nuclear recep...    27   9.8  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score =  132 bits (319), Expect = 2e-31
 Identities = 63/108 (58%), Positives = 86/108 (79%), Gaps = 1/108 (0%)
 Frame = +3

Query: 234 EGSQDHCQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIA 413
           +G +  C+LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG+++++ +I IA
Sbjct: 54  KGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIA 113

Query: 414 KIMRNRSMARYLSGSVKEILGTAQSVGCTVEGGR-HMILLMTSTAEFD 554
           +IMR RSMA+ L G+VKEILGTAQSVGCT++G   H I+   +  E +
Sbjct: 114 RIMRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIE 161



 Score =  117 bits (281), Expect = 7e-27
 Identities = 51/59 (86%), Positives = 56/59 (94%)
 Frame = +1

Query: 76  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKIT 252
           MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVT 59


>Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical
           protein JC8.3c protein.
          Length = 50

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 26/46 (56%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
 Frame = +3

Query: 420 MRNRSMARYLSGSVKEILGTAQSVGCTVEGGR-HMILLMTSTAEFD 554
           MR RSMA+ L G+VKEILGTAQSVGCT++G   H I+   +  E +
Sbjct: 1   MRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIE 46


>Z81042-5|CAD44090.1|  331|Caenorhabditis elegans Hypothetical
           protein C27H6.4b protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +1

Query: 355 SRKISNTTATSPLRM*SELRRS*ETDQWPGTFLAQ*KRFLAQHSQLDVLWREA 513
           SR +S TTA S      +L     TD+    + A  KR+ A    +DVLWR A
Sbjct: 94  SRSLSQTTAHSKTMSFEDLDALFGTDRVQEGYDALKKRYDAGEKSIDVLWRLA 146


>Z81042-4|CAB02796.1|  272|Caenorhabditis elegans Hypothetical
           protein C27H6.4a protein.
          Length = 272

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +1

Query: 355 SRKISNTTATSPLRM*SELRRS*ETDQWPGTFLAQ*KRFLAQHSQLDVLWREA 513
           SR +S TTA S      +L     TD+    + A  KR+ A    +DVLWR A
Sbjct: 35  SRSLSQTTAHSKTMSFEDLDALFGTDRVQEGYDALKKRYDAGEKSIDVLWRLA 87


>Z81476-1|CAB03921.2|  431|Caenorhabditis elegans Hypothetical
           protein C25F9.1 protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -1

Query: 580 ILETFIHQWSNSAVDVINKIMWRPPS--TVHPTDCAVPRISFTEPERYRAIDLFLMIFAI 407
           ++ + I  + N  ++++    WRPPS  T++P +   P     + + Y+       IF +
Sbjct: 151 LISSLITCFFNLKLEIVPSTKWRPPSSCTMYPANSTFPGFGTIQTDFYKDFPEIFDIFTL 210


>AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein37 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 496 HPTDCAVPRISFTEPERYRAIDL 428
           HPT CAV    F +P +Y  IDL
Sbjct: 291 HPTACAVSLFLFYDPYQYYLIDL 313


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 249 DLETLPVTCGLGNVITHLFRRQTKRTDFR 163
           D ++LP+ C LG V+ + ++     TDFR
Sbjct: 386 DSQSLPIWCKLGKVVKYKYKVTPGWTDFR 414


>AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine
           receptor, class w protein91 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 498 YIQLTVLCQESLLLSQKGTGPLICFS*SSQFR 403
           YI +  +C ++LLL    T   ICF  SSQ+R
Sbjct: 309 YINVDAIC-DTLLLWNASTNCFICFLMSSQYR 339


>Z82259-1|CAB05126.3|  437|Caenorhabditis elegans Hypothetical
           protein C28D4.1 protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 550 NSAVDVINKIMWRPPSTVHPTDCAV 476
           N   + ++KI WR PS V  T C V
Sbjct: 2   NIPFNSVSKIQWRNPSPVSDTSCLV 26


>Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical
           protein M01G12.6 protein.
          Length = 419

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 173 VLLVCLLKRWVMTL 214
           +L++CLLKRW M L
Sbjct: 180 ILMICLLKRWKMNL 193


>AY305849-1|AAR11993.1|  437|Caenorhabditis elegans nuclear receptor
           NHR-100 protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 550 NSAVDVINKIMWRPPSTVHPTDCAV 476
           N   + ++KI WR PS V  T C V
Sbjct: 2   NIPFNSVSKIQWRNPSPVSDTSCLV 26


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,142,808
Number of Sequences: 27780
Number of extensions: 300417
Number of successful extensions: 847
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)