Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20586
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    24   1.3  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    24   1.3  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    24   1.3  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    24   1.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.2  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   6.7  

>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = -2

Query: 300 REQQLSGLVCFELSADSDLETLPVTCGLGNVITHLFRRQTKRTDF 166
           R Q  + L      ADSD+ TLP   G     T   R      DF
Sbjct: 117 RPQNETILTTVSSEADSDVTTLPTLIGKNETSTQSSRSVESVEDF 161


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = -2

Query: 300 REQQLSGLVCFELSADSDLETLPVTCGLGNVITHLFRRQTKRTDF 166
           R Q  + L      ADSD+ TLP   G     T   R      DF
Sbjct: 165 RPQNETILTTVSSEADSDVTTLPTLIGKNETSTQSSRSVESVEDF 209


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = -2

Query: 300 REQQLSGLVCFELSADSDLETLPVTCGLGNVITHLFRRQTKRTDF 166
           R Q  + L      ADSD+ TLP   G     T   R      DF
Sbjct: 165 RPQNETILTTVSSEADSDVTTLPTLIGKNETSTQSSRSVESVEDF 209


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = -2

Query: 300 REQQLSGLVCFELSADSDLETLPVTCGLGNVITHLFRRQTKRTDF 166
           R Q  + L      ADSD+ TLP   G     T   R      DF
Sbjct: 165 RPQNETILTTVSSEADSDVTTLPTLIGKNETSTQSSRSVESVEDF 209


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 517 WRPPSTVHPTDCAVPRISFTEPERYR 440
           W PP  + PT+  V   +  E E +R
Sbjct: 574 WEPPRALWPTEWKVRPSTVEEREEFR 599


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 546  PLLMSSIRSCGGLPPQYIQLTVLCQESLLLS 454
            PLL  ++     +PP+ ++   L  +SL +S
Sbjct: 1101 PLLTQTMEDVPSIPPEDVRCAALTSQSLQVS 1131


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 546  PLLMSSIRSCGGLPPQYIQLTVLCQESLLLS 454
            PLL  ++     +PP+ ++   L  +SL +S
Sbjct: 1097 PLLTQTMEDVPSIPPEDVRCAALTSQSLQVS 1127


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 354 KQKNIKHNGNISLEDVIGIAKIMRNRSMARYLS 452
           K+K I +   +++ D  G+  +  NR+   YL+
Sbjct: 131 KKKGINNGIIVNINDASGLNLLPMNRNRPAYLA 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,518
Number of Sequences: 438
Number of extensions: 4194
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)