Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20586
(586 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ... 136 1e-32
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ... 131 3e-31
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A) 131 3e-31
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p... 29 2.3
At2g31890.1 68415.m03896 expressed protein 28 4.0
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote... 27 7.0
At3g05140.1 68416.m00558 protein kinase family protein contains ... 27 7.0
At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 ... 27 7.0
At4g02640.2 68417.m00359 bZIP transcription factor family protei... 27 9.2
At4g02640.1 68417.m00358 bZIP transcription factor family protei... 27 9.2
>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
PIR:T45883
Length = 166
Score = 136 bits (328), Expect = 1e-32
Identities = 66/85 (77%), Positives = 76/85 (89%)
Frame = +3
Query: 255 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 434
+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DVI IAKIMR RS
Sbjct: 62 KLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPRS 121
Query: 435 MARYLSGSVKEILGTAQSVGCTVEG 509
+A+ LSG+VKEILGT SVGCTV+G
Sbjct: 122 IAKELSGTVKEILGTCVSVGCTVDG 146
Score = 92.7 bits (220), Expect = 2e-19
Identities = 42/61 (68%), Positives = 52/61 (85%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 252
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 253 V 255
V
Sbjct: 61 V 61
>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
RIBOSOMAL PROTEIN L12, Prunus armeniaca,
SWISSPROT:RL12_PRUAR
Length = 166
Score = 131 bits (317), Expect = 3e-31
Identities = 63/85 (74%), Positives = 75/85 (88%)
Frame = +3
Query: 255 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 434
+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV IA+IMR RS
Sbjct: 62 KLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRS 121
Query: 435 MARYLSGSVKEILGTAQSVGCTVEG 509
+A+ LSG+V+EILGT SVGCTV+G
Sbjct: 122 IAKELSGTVREILGTCVSVGCTVDG 146
Score = 92.7 bits (220), Expect = 2e-19
Identities = 42/61 (68%), Positives = 52/61 (85%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 252
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 253 V 255
V
Sbjct: 61 V 61
>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
Length = 166
Score = 131 bits (317), Expect = 3e-31
Identities = 63/85 (74%), Positives = 75/85 (88%)
Frame = +3
Query: 255 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 434
+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV IA+IMR RS
Sbjct: 62 KLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRS 121
Query: 435 MARYLSGSVKEILGTAQSVGCTVEG 509
+A+ LSG+V+EILGT SVGCTV+G
Sbjct: 122 IAKELSGTVREILGTCVSVGCTVDG 146
Score = 92.7 bits (220), Expect = 2e-19
Identities = 42/61 (68%), Positives = 52/61 (85%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 252
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 253 V 255
V
Sbjct: 61 V 61
>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
putative / ADP, ATP translocase, putative / adenine
nucleotide translocase, putative strong similarity to
SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
chloroplast precursor (ADP/ATP translocase 1) (Adenine
nucleotide translocase 1) {Arabidopsis thaliana};
contains Pfam profile PF03219: TLC ATP/ADP transporter
Length = 618
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -1
Query: 418 IFAIPITSSREMLPLCLIFFCFL 350
IF + +T+ ++++PL L+FFC L
Sbjct: 102 IFGVEVTTLKKIVPLGLMFFCIL 124
>At2g31890.1 68415.m03896 expressed protein
Length = 671
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 333 EPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMA 440
+PP+ RKKQKN K +LED G+ +R R +A
Sbjct: 112 QPPKKRKKQKNSK-----ALEDTEGMDWCVRARKIA 142
>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 receptor type
precursor, Oryza sativa, PIR:A57676
Length = 1025
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -1
Query: 454 PERYRAIDLFLMIFAIPITSSREMLPLCLIFFCFLRSRGGSLRA 323
P R+ ++ + I + ++ +L LC+++ C+ + R S+RA
Sbjct: 645 PRRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRVKSVRA 688
>At3g05140.1 68416.m00558 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 460
Score = 27.5 bits (58), Expect = 7.0
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +3
Query: 477 TAQSVGCTVEGGRHMILLMT 536
TA+ +GC +EGG H++ ++
Sbjct: 200 TAKFIGCCIEGGMHLVFRLS 219
>At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 /
ADP, ATP translocase 1 / adenine nucleotide translocase
1 (AATP1) identical to SP|Q39002 Chloroplast ADP,ATP
carrier protein 1, chloroplast precursor (ADP/ATP
translocase 1) (Adenine nucleotide translocase 1)
{Arabidopsis thaliana}
Length = 624
Score = 27.5 bits (58), Expect = 7.0
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -1
Query: 418 IFAIPITSSREMLPLCLIFFCFL 350
IF + + + ++++PL L+FFC L
Sbjct: 105 IFGVEVATLKKIIPLGLMFFCIL 127
>At4g02640.2 68417.m00359 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 417
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 133 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 231
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 171 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 203
>At4g02640.1 68417.m00358 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 411
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 133 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 231
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 165 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 197
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,469,120
Number of Sequences: 28952
Number of extensions: 286100
Number of successful extensions: 819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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