Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20584
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.19 |||mitochondrial ribosomal protein subunit L27|Schiz...    27   2.6  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   3.4  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    26   4.5  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   6.0  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    26   6.0  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   7.9  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   7.9  

>SPAC3A12.19 |||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -2

Query: 142 PMSTKVGISFHKGANR-LNGERFSHGN--VNWSSV 47
           PM+TK+G  ++KG      G++  HG   V WS V
Sbjct: 14  PMTTKLGHQYYKGTRTGKMGQKTRHGGFLVQWSRV 48


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 71  WERELVICNGDGCAITSLS 15
           WE +  +C+  GCA+ SL+
Sbjct: 71  WENDNAMCSNQGCAVKSLN 89


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 233 RLYLRPRTQEAKEDDHDVFASQFFHTYSLPVNSSA 337
           RL L+    + + DD+  F  +F  TYS   N+S+
Sbjct: 601 RLLLKKEIGQLESDDYIQFEKEFLETYSALHNTSS 635


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 36   PVSITDDQFTFPWLNLSPFSLFAPL-WKLIPTF 131
            P +ITDD    P  N     L +PL W +I ++
Sbjct: 1059 PYAITDDNDYLPMANTGSLDLVSPLTWTVIDSY 1091


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 124 GISFHKGANRLNGERFSHGNVNWSSVMETGAR 29
           G+ F+ GA     E  +  N +W +++++GAR
Sbjct: 400 GVEFYVGAASSEVEAAAQKNGDWQTLIDSGAR 431


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = +2

Query: 341 DVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYK 466
           D+  +L ++  L ++AP  +   +T    +V+  +    PY+
Sbjct: 111 DIKKDLATESQLPLSAPFKDESTRTMTDPQVLAYIHQSMPYQ 152


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = +2

Query: 341 DVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYK 466
           D+  +L ++  L ++AP  +   +T    +V+  +    PY+
Sbjct: 111 DIKKDLATESQLPLSAPFKDESTRTMTDPQVLAYIHQSMPYQ 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,344
Number of Sequences: 5004
Number of extensions: 38361
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)