Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20584
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0018 - 391827-392254,392553-392608,393976-394005,394666-39...    33   0.29 
03_01_0419 - 3220259-3220333,3220387-3220519,3220616-3220707           31   1.2  
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    29   4.7  
01_01_0092 + 722744-723459,723542-723711,723792-724885                 29   4.7  
07_03_1393 - 26245105-26246862                                         28   6.2  
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602...    28   6.2  
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572...    28   8.3  
01_05_0198 + 19170217-19171701                                         28   8.3  

>09_01_0018 -
           391827-392254,392553-392608,393976-394005,394666-394736,
           394819-394948,397627-397717,397798-397919,398014-398303
          Length = 405

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +2

Query: 227 KGRLYLRPRTQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENV 406
           +GR   R R +E K + H      F+H  SL    +A  V +   S  +  +T  I   V
Sbjct: 216 RGRSPTRDRDRERKHERHHRNLFNFYHVLSLYQVPAALAVLSAFDSMNWTEITTEIGIMV 275

Query: 407 DKTKNTE-RVVPIVETG 454
              K TE   V  +ETG
Sbjct: 276 GDGKETEIETVKEIETG 292


>03_01_0419 - 3220259-3220333,3220387-3220519,3220616-3220707
          Length = 99

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = -3

Query: 447 STIGTTRSVFFVLSTFSLIGAVTTRYPSEVSSAVTSAALEFTGRL*VWKNWLANTSWSSS 268
           S I   RS  F+  +F L  A+ T+    V  A+T     +   + V  +W +  SWS +
Sbjct: 29  SIISNLRS-HFIFKSFVLAAAIQTQDFWSVVDAITGEVC-YNSTIHVGSDWFSPLSWSVA 86

Query: 267 LASCV 253
           LA+ V
Sbjct: 87  LAAAV 91


>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
            3764013-3764961,3766967-3767064,3768144-3768284,
            3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 62   HVPMAEPFAI-QSVCSFVEADPHFCGHRAKN 151
            HVPM EP  I  S C  V AD    G   KN
Sbjct: 1336 HVPMQEPLRIASSCCEIVNADQVCAGEVGKN 1366


>01_01_0092 + 722744-723459,723542-723711,723792-724885
          Length = 659

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 39  VSITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGPRIY 155
           +S  + +F     NL   S   PLW  +P F D+G ++Y
Sbjct: 92  ISYNESRFWVVDANLDNSSCPLPLWNNLPYFNDMGTKLY 130


>07_03_1393 - 26245105-26246862
          Length = 585

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 101 KQTEWRKVQPWERELVICNGDGCAITSLSRAGK 3
           ++  WR+ + + R  V+  GDGCA+  ++R GK
Sbjct: 199 REKSWRRYRDYRR-FVLVPGDGCAL-DINRVGK 229


>03_05_0136 +
           21158917-21159939,21160183-21160241,21160259-21160294,
           21160345-21160387,21160582-21160698,21162090-21162179,
           21162329-21162436,21162547-21162588
          Length = 505

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +3

Query: 516 DSGAEDISSSGSDCSTGTRG 575
           D+GA D++SSGS+CS  +RG
Sbjct: 179 DAGA-DVASSGSECSDASRG 197


>04_04_0201 -
           23555336-23556008,23556097-23556258,23556353-23557206,
           23557452-23557613,23558197-23558649,23559729-23559788,
           23559983-23560058,23561546-23561593,23561948-23562022,
           23562067-23562494
          Length = 996

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 308 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDE 475
           T S+ V+  AA      + +G + VT+ +S+ VD+      V+P+    A  + DE
Sbjct: 659 TASMQVHEGAAAAQLGESPEG-VDVTSAVSDEVDRDDKATHVLPLAAAAADGESDE 713


>01_05_0198 + 19170217-19171701
          Length = 494

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -1

Query: 518 VVESPRFLLSSFLQARPSCTE--RQSRQ*VQRAL 423
           +VE  + +L+S L+ARP C E  R++R   +RAL
Sbjct: 279 LVECSQAMLASLLRARPLCGERLREARATAERAL 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,448,000
Number of Sequences: 37544
Number of extensions: 258086
Number of successful extensions: 858
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)