Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20584
(701 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 31 1.2
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59) 29 2.8
SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3) 28 8.4
SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12) 28 8.4
SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0) 28 8.4
SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047) 28 8.4
SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36) 28 8.4
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 269 EDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA 388
E +H S+F +Y+LP + V++ +T DG L + A
Sbjct: 73 EGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDGLLHIEA 112
>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
Length = 625
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 311 YSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPY 463
YS+ S + SD YL+ TA +SE +D + R V I TG P+
Sbjct: 171 YSITRGHSVMSEHLNIISDRYLLFTAQVSEGLDFSDINGRAVVI--TGLPF 219
>SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 633
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 567 TRGEERTDHALRTR*SDRKRQRDPTRKRSF 656
TRG ER++HA + RK +++ T+ SF
Sbjct: 240 TRGHERSEHAEKAAELKRKEKKEATKHNSF 269
>SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 501 PWTFYDSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPT 641
PWTF S A SSS S S+ ++ E+ T H+ + R PT
Sbjct: 206 PWTFRMSPASSSSSSSSSSSSSSQ-EDTTSHSCHSPSQAPASPRPPT 251
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 314 SLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEKT 490
++PVN+ A G +VT ++ V + T V P+V A K EP +T
Sbjct: 1250 TMPVNTQAVVANMVTQPHGTTIVTPAVANMVTQPHGTTIVTPVVTQSAVATK-EPARRT 1307
>SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)
Length = 444
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 33 APVSITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGP 146
+P + T DQ + + + SPFS APL P FVD P
Sbjct: 220 SPETFTSDQLSPTYSSPSPFSSKAPL----PVFVDFTP 253
>SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12)
Length = 275
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 151 ILGPMSTKVGISFHKGANRLNGERFSH 71
+ G T+VGI H G NR+ + F H
Sbjct: 209 VAGEKKTEVGIKIHSGRNRIVRKIFEH 235
>SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 817
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +2
Query: 275 DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 454
D DV+A Q YS PV + + + G L T + +KT+N + I+E
Sbjct: 61 DFDVYAHQSETEYSGPVPDPNSRPSGTYSKIGTLNATKLWTSFGNKTQNVQTFSLILENS 120
Query: 455 APY 463
PY
Sbjct: 121 KPY 123
>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
Length = 1035
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 266 KEDDHDVFASQFFHTYSLPVNSSAA 340
+E+D DV+A Y +P N SAA
Sbjct: 250 EEEDDDVYAQDIMSNYDIPKNISAA 274
>SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)
Length = 405
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 158 SVDSWPDVHKSGDQLPQRSKQTEWRKVQPWEREL--VICNGD 39
+V S+ + KSG +P R++ T +R PW +E+ ++C D
Sbjct: 135 AVSSYRFLCKSGHYIPLRTRSTLFR--NPWTKEIEFLVCTND 174
>SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36)
Length = 617
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +2
Query: 275 DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 454
D DV+A Q YS PV + + G L T +KT+N + + I+E
Sbjct: 137 DFDVYAHQSETQYSGPVPDPNNSPSGTCSKIGTLNATELSPSLGNKTQNVQTLSLILENS 196
Query: 455 APY 463
PY
Sbjct: 197 KPY 199
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,804,213
Number of Sequences: 59808
Number of extensions: 290178
Number of successful extensions: 1053
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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