Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20584
(701 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical ... 32 0.35
AC024799-10|AAK72319.1| 495|Caenorhabditis elegans Cytochrome p... 30 1.4
L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock pro... 30 1.8
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z81125-9|CAL64006.1| 112|Caenorhabditis elegans Hypothetical pr... 28 5.6
EF035034-1|ABK34454.1| 112|Caenorhabditis elegans heat-shock pr... 28 5.6
Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical pr... 28 7.4
U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone... 28 7.4
AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear recep... 28 7.4
AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear recep... 28 7.4
AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear recep... 28 7.4
>AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical
protein Y55F3BR.6 protein.
Length = 180
Score = 32.3 bits (70), Expect = 0.35
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 266 KEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERV-VPI 442
KED + S F + LP + V ++LT+DG+L + A E K + + + +
Sbjct: 113 KEDTYGTIESTFKRRFPLPKAVAPESVQSQLTADGHLTIDAKAPE--PKQEGARPIQIKV 170
Query: 443 VETGAPYKK 469
+ T A +K
Sbjct: 171 INTSAEQQK 179
>AC024799-10|AAK72319.1| 495|Caenorhabditis elegans Cytochrome p450
family protein33C11 protein.
Length = 495
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 12 PGQRSYRAPVSITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIG 143
PG +R I D FTF WL +P+ + + L K+ TF+ G
Sbjct: 46 PGYECFRRWTRIYGDVFTF-WLGDTPYVVISSLEKMKETFIKDG 88
>L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock
protein protein 12.2 protein.
Length = 110
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 260 EAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA 388
E + D+H A + Y LP + + V + L + G L +TA
Sbjct: 64 ETRSDNHGTVAREINRAYKLPDDVDVSTVKSHLATRGVLTITA 106
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical
protein C06B8.7 protein.
Length = 3118
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 415 EKYRARCTYCRDWRSVQEGRACR 483
+++R+ CT +W S+ G ACR
Sbjct: 146 DRWRSVCTMVTNWTSIDTGTACR 168
>Z81125-9|CAL64006.1| 112|Caenorhabditis elegans Hypothetical
protein T22A3.2b protein.
Length = 112
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 236 LYLRPRTQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA 388
++LR + + ++ + + TY LP + + V + L S G L +TA
Sbjct: 59 IHLRHDLLQNRPTEYGIVNREVHRTYKLPEDVDPSTVRSHLNSSGVLTITA 109
>EF035034-1|ABK34454.1| 112|Caenorhabditis elegans heat-shock
protein 12.1 protein.
Length = 112
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 236 LYLRPRTQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA 388
++LR + + ++ + + TY LP + + V + L S G L +TA
Sbjct: 59 IHLRHDLLQNRPTEYGIVNREVHRTYKLPEDVDPSTVRSHLNSSGVLTITA 109
>Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical
protein C48D5.1 protein.
Length = 619
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 388 ADQRKC**NEKYRARCTYCRDWRSVQEG 471
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
>U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone
receptor familymember CNR8 protein.
Length = 463
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 388 ADQRKC**NEKYRARCTYCRDWRSVQEG 471
A + C +++YR+RC YCR + ++ G
Sbjct: 149 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 176
>AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 388 ADQRKC**NEKYRARCTYCRDWRSVQEG 471
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
>AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 469
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 388 ADQRKC**NEKYRARCTYCRDWRSVQEG 471
A + C +++YR+RC YCR + ++ G
Sbjct: 155 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 182
>AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 388 ADQRKC**NEKYRARCTYCRDWRSVQEG 471
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,912,136
Number of Sequences: 27780
Number of extensions: 211410
Number of successful extensions: 829
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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