Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20584
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   4.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   4.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.5  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 391 DQRKC**NEKYRARCTYCR 447
           +++ C  +++ R RC YCR
Sbjct: 148 EEKSCIIDKRQRNRCQYCR 166


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 391 DQRKC**NEKYRARCTYCR 447
           +++ C  +++ R RC YCR
Sbjct: 148 EEKSCIIDKRQRNRCQYCR 166


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 105 PLWKLIPT 128
           PLWKL+PT
Sbjct: 258 PLWKLLPT 265


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 133 TKVGISFHKGANRLNGERFSH 71
           ++VG  +H+    +N ERF +
Sbjct: 199 SRVGTKYHRSGGLMNVERFPY 219


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 283 VMVVFFSFLRPWTKIKSPF 227
           V+ V FSFLR  TK++  +
Sbjct: 21  VLFVLFSFLRTRTKLQPTY 39


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 283 VMVVFFSFLRPWTKIKSPF 227
           V+ V FSFLR  TK++  +
Sbjct: 21  VLFVLFSFLRTRTKLQPTY 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,064
Number of Sequences: 438
Number of extensions: 2722
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)