Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20584
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34320.1 68414.m04259 expressed protein contains Pfam domain ...    32   0.42 
At5g53800.1 68418.m06685 expressed protein                             31   0.74 
At3g49800.1 68416.m05445 BSD domain-containing protein contains ...    29   3.0  
At2g04900.1 68415.m00509 expressed protein                             29   3.0  
At5g24740.1 68418.m02920 expressed protein                             29   3.9  
At4g37650.1 68417.m05325 short-root transcription factor (SHR)         28   5.2  
At1g64550.1 68414.m07317 ABC transporter family protein similar ...    28   5.2  
At3g07090.1 68416.m00843 expressed protein                             28   6.9  
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea...    28   6.9  
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea...    28   6.9  

>At1g34320.1 68414.m04259 expressed protein contains Pfam domain
           PF05003: protein of unknown function (DUF668)
          Length = 657

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 299 FFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTER--VVPIVETGA 457
           F H     +N++A+D+ +     G     +P++ENVD  K+T      PIV +G+
Sbjct: 19  FAHVNGHHLNNNASDLNSHSGESGLKDDPSPVTENVDDNKHTSESFSFPIVSSGS 73


>At5g53800.1 68418.m06685 expressed protein
          Length = 351

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +3

Query: 516 DSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKRSFCLSDN 671
           DSG+E    SGS+     R   R D   R   SDRK  R   R+R +  S +
Sbjct: 59  DSGSESGLESGSESEKEERRRSRKDRGKRK--SDRKSSRSRRRRRDYSSSSS 108


>At3g49800.1 68416.m05445 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 428

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +2

Query: 278 HDVFASQFFHTYSLP-VNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 454
           H +F+     T S P V  S A ++ EL        T  + E+ D+  ++E V P+ +  
Sbjct: 244 HPIFSKHDALTLSTPQVLESRALLSHELLRKRNKD-TVVVPESSDRGADSENVEPLFQPT 302

Query: 455 APYKKDEP--VEKTTVETL 505
            P  K EP  V+  TVET+
Sbjct: 303 NPSPKSEPEPVKTITVETI 321


>At2g04900.1 68415.m00509 expressed protein
          Length = 128

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -3

Query: 432 TRSVFFVLSTFSLIGAVTTRYPSEVSSAVTSAALEFTG 319
           T S++ ++ T +L+ A +T+YP+     +T+  + F+G
Sbjct: 58  TASLYHLVHTAALVSAPSTKYPNIFGGLLTAGIVAFSG 95


>At5g24740.1 68418.m02920 expressed protein
          Length = 3306

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
 Frame = -2

Query: 652  LRFRVGSRCLFLSLHRVRRAWSVLSSPRVPVLQS-----LPLELMSSAPES*KVQGFYCR 488
            ++FR+    L   LHR+R+A   L S   PVLQ+        EL ++ P S  VQ F   
Sbjct: 1266 IKFRIFVNLLTSKLHRLRKAPGTLLSE--PVLQADMKFVCSGELKNNFPMSLDVQFFKIG 1323

Query: 487  LFYRL--VLLVRSASLDNRYNAL 425
            L+  L  V+L R  + D   +AL
Sbjct: 1324 LYSLLSSVMLARCINADGDPSAL 1346


>At4g37650.1 68417.m05325 short-root transcription factor (SHR) 
          Length = 531

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 436 TYCRDWRSVQEGRACRKDDSRNLGLST 516
           T+C  W ++ E  A R DD+ +L L+T
Sbjct: 264 TFCTQWPTLLEALATRSDDTPHLRLTT 290


>At1g64550.1 68414.m07317 ABC transporter family protein similar to
           ABC transporter protein GB:AAF31030 GI:6899653 from
           [Leishmania major]
          Length = 715

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +2

Query: 317 LPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIV----ETGAPYKKDEPVE 484
           +P N     V  E+  D    +   ++ ++++TK  E  + I+    ET  P  KD    
Sbjct: 228 IPTNCQILHVEQEVVGDKTTALQCVLNTDIERTKLLEEEIQILAKQRETEEPTAKDGMPT 287

Query: 485 KTTVE 499
           K TVE
Sbjct: 288 KDTVE 292


>At3g07090.1 68416.m00843 expressed protein
          Length = 265

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 365 DGYLVVTAPISENVDKTKNTERVVPIVETGAPYK--KDEPV 481
           DG  +V AP  E  + +  TE+V P+++  A  +  KD+P+
Sbjct: 177 DGPQIVIAPKLEAAETSTATEKVPPVIQPSASKEKVKDDPL 217


>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 793

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 384 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 298
           V  R PSE++S++ +A L  T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564


>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 790

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 384 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 298
           V  R PSE++S++ +A L  T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,324,247
Number of Sequences: 28952
Number of extensions: 202626
Number of successful extensions: 635
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)