Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20582
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    79   8e-16
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    77   2e-15
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    77   2e-15

>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 78.6 bits (185), Expect = 8e-16
 Identities = 33/57 (57%), Positives = 47/57 (82%)
 Frame = +2

Query: 509 IAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFT 679
           + +G PN K+VREL+YKRGF K++ QRIP++ N+I+E  L K++I+ VEDLIHEI+T
Sbjct: 141 VTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYT 197



 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 32/56 (57%), Positives = 39/56 (69%)
 Frame = +1

Query: 262 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 429
           Y  EYR  ER++I LAR+AR  GNY+VP E KL FV+RIRGIN + PK+ K    L
Sbjct: 58  YEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLL 113



 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 20/35 (57%), Positives = 27/35 (77%)
 Frame = +3

Query: 402 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEP 506
           + RK++QL RL QINNG+FV+ NKA   ML++ EP
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEP 139


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 30/56 (53%), Positives = 47/56 (83%)
 Frame = +2

Query: 509 IAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIF 676
           + +G PNL SVREL+YKRGF K++GQRI ++ N+++E+ L K+++I +ED+IHEI+
Sbjct: 140 VMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIY 195



 Score = 58.4 bits (135), Expect = 9e-10
 Identities = 26/56 (46%), Positives = 36/56 (64%)
 Frame = +1

Query: 262 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 429
           ++  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI G+  + PK  K    L
Sbjct: 57  FINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112



 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = +3

Query: 402 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEP*LLGDTP 527
           ++RKVL+L RL +INN VFVR NKA   MLRI EP ++   P
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIP 145


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 32/57 (56%), Positives = 47/57 (82%)
 Frame = +2

Query: 509 IAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFT 679
           + +G PNLK+VREL+YKRGF K++ QRI ++ N+I+E  L K++I+ +EDLIHEI+T
Sbjct: 142 VTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYT 198



 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 33/56 (58%), Positives = 38/56 (67%)
 Frame = +1

Query: 262 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 429
           Y  EYR  ER++I L R+AR  GNYYVP E KL FVIRIRGIN + PK+ K    L
Sbjct: 59  YDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 22/35 (62%), Positives = 28/35 (80%)
 Frame = +3

Query: 402 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEP 506
           + RK++QL RL QINNGVFV+ NKAT  ML++ EP
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEP 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,293
Number of Sequences: 5004
Number of extensions: 52937
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)