Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20582
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...    92   4e-19
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...    86   2e-17
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    71   1e-12
09_03_0057 + 11944973-11947159                                         28   8.3  
02_03_0221 - 16554910-16555560                                         28   8.3  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 37/57 (64%), Positives = 50/57 (87%)
 Frame = +2

Query: 509 IAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFT 679
           +A+GYPNLKSVREL+YKRG+ KL+ QRIP+ +N ++E+ L KH+IIC+EDL+HEI T
Sbjct: 137 VAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMT 193



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 27/56 (48%), Positives = 39/56 (69%)
 Frame = +1

Query: 262 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 429
           Y +EY  +E++ ++L R+AR +G +YV  EAKL FV+RIRGIN + PK+ K    L
Sbjct: 54  YAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLL 109



 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +3

Query: 402 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEP 506
           + RK+LQL RLRQI NGVF+++NKAT+NMLR  EP
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEP 135


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 38/63 (60%), Positives = 51/63 (80%), Gaps = 6/63 (9%)
 Frame = +2

Query: 509 IAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR------LHKHNIICVEDLIHE 670
           +A+GYPNLKSVREL+YKRG+ KL+ QRIP+T+N ++E+       L KH+IIC+EDL+HE
Sbjct: 136 VAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLVHE 195

Query: 671 IFT 679
           I T
Sbjct: 196 IMT 198



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 26/56 (46%), Positives = 38/56 (67%)
 Frame = +1

Query: 262 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 429
           Y +EY  +E++ ++L R+AR +G +YV  E KL FV+RIRGIN + PK+ K    L
Sbjct: 53  YAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLL 108



 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +3

Query: 402 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEP 506
           + RK+LQL RLRQI NGVF+++NKAT+NMLR  EP
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEP 134


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 28/55 (50%), Positives = 43/55 (78%)
 Frame = +2

Query: 509 IAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEI 673
           I +G+PNLK+V++L+YK+G   L  +  P+TSN ++EK L ++ IIC+EDL+HEI
Sbjct: 139 ITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEI 193



 Score = 32.3 bits (70), Expect = 0.38
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 405 VRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEP 506
           +R++L+  RL Q+  GVF++   AT+  L + EP
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEP 137


>09_03_0057 + 11944973-11947159
          Length = 728

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
 Frame = +1

Query: 487 CYVSPSLNCLG---IPQLKECP 543
           C V+P LN +G   IPQLK CP
Sbjct: 414 CGVNPELNPIGKRIIPQLKRCP 435


>02_03_0221 - 16554910-16555560
          Length = 216

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -2

Query: 267 DVLFTLLKISLFFLMAEERLFSVTCNLLVRRASL--LLRCLSTDSGTAGSFLLSSFPLT 97
           DVL   L  ++F  +A      V C   V   +   LL  +   +G AGSFL + FP T
Sbjct: 146 DVLHGALSFAVFLAVAMVDRNVVACFYPVESPATRQLLAAVPMAAGAAGSFLFAMFPST 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,160,630
Number of Sequences: 37544
Number of extensions: 330025
Number of successful extensions: 725
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)