Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20582
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)       95   5e-20
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)                    28   8.4  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   8.4  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score = 95.1 bits (226), Expect = 5e-20
 Identities = 43/57 (75%), Positives = 49/57 (85%)
 Frame = +2

Query: 509 IAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFT 679
           IA+GYPNLKSVREL+YKRG+ K+  QR+ +T NSIVEK L KH IICVEDLIHEIFT
Sbjct: 137 IAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGIICVEDLIHEIFT 193



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 36/56 (64%), Positives = 42/56 (75%)
 Frame = +1

Query: 262 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 429
           YVKEYR KE DE+R+ + A+  GN+YVP EA+LAFVIRIRGIN VSPK  K    L
Sbjct: 54  YVKEYRQKEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLL 109



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 29/35 (82%), Positives = 32/35 (91%)
 Frame = +3

Query: 402 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEP 506
           +VRK+LQL RLRQINNGVFVRLNKAT NMLRI +P
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQP 135



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +2

Query: 110 EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRVNSTSRNTASRN 289
           +D  K+P VPE++LK             +  L ++     K++EIFKR     +    + 
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 290 V 292
           V
Sbjct: 63  V 63


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 308 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV*TAPNK 445
           PDK A+  TTT P   +   ++     T + R P  S T+ T P K
Sbjct: 363 PDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTISTQPKK 408


>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
          Length = 1338

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 200  TLKRRSSAIKKKREIFKRVNSTSRNTASRNVMKSD 304
            T+ RR   +KKKRE+     S SRN     V +SD
Sbjct: 949  TIDRRRKRLKKKREVTDSFRSYSRNEIFFWVTQSD 983


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 283 KERDEIRLARQARNRGNYYVP 345
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,083,441
Number of Sequences: 59808
Number of extensions: 399000
Number of successful extensions: 909
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)