Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20582
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...    87   9e-18
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    32   0.35 
AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      29   3.2  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    29   3.2  
AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical ...    29   4.3  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 36/57 (63%), Positives = 47/57 (82%)
 Frame = +2

Query: 509 IAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFT 679
           +AWGYPN K++ +L+YKRG+AK+ G R+PIT N+IVE+ L K NIIC+EDL HEI T
Sbjct: 136 VAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIAT 192



 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 28/51 (54%), Positives = 40/51 (78%)
 Frame = +1

Query: 262 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVK 414
           YV+EYR  +++ +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK  K
Sbjct: 53  YVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRK 103



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 25/33 (75%), Positives = 29/33 (87%)
 Frame = +3

Query: 408 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAEP 506
           RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EP
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEP 134


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = +2

Query: 227 KKKREIFKRVNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 406
           KK+R++ ++    SR  ASR  +K     K    A +T P +PN +  S S  S ++  +
Sbjct: 21  KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRYASN 80

Query: 407 P*SSATV*TAP 439
             S   + + P
Sbjct: 81  RSSQVKIRSVP 91


>AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical
           protein C36C9.4 protein.
          Length = 671

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = -2

Query: 648 QIMLCLWSL-FSTMLLEVIGIRCPLSLANPRLYTNSRTLFKLGYPQAIKARRYVAYSQ*P 472
           +I++CL +L F T+  E   +   L +    +YTNS+         A  A  +++ +   
Sbjct: 417 RIVICLVALSFDTLSPEARVVIVGLGMLGNEMYTNSKASCLFEQQMAAGAAWFLSEANVE 476

Query: 471 YSDVQTHHCLFGAV*TVAELYG 406
           Y  ++ H  LF  +  + EL+G
Sbjct: 477 YLSIKAHEVLF-HLPEINELFG 497


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
            C05C12.3 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 336  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 470
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 336  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 470
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1681

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 336  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 470
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377


>AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical
           protein F36F12.1 protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 327 WQLLRSRGSQIGICHPNPWYQPSFTEV-RKVLQLFRLRQINN 449
           +Q++R  G Q+GI    PW  P F++V R  L+  R  ++ N
Sbjct: 210 YQMVRELG-QLGIVTTQPWLTPKFSQVARPFLEPSRNSELRN 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,706,787
Number of Sequences: 27780
Number of extensions: 290187
Number of successful extensions: 737
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)