Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20582
(703 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 90 2e-18
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 90 2e-18
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 89 3e-18
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 89 3e-18
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 89 3e-18
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 88 6e-18
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 66 3e-11
At2g44735.1 68415.m05566 expressed protein ; expression supporte... 29 3.9
At5g59510.1 68418.m07458 expressed protein 28 5.2
At5g06740.1 68418.m00762 lectin protein kinase family protein co... 27 9.1
At3g23800.1 68416.m02991 selenium-binding family protein contain... 27 9.1
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 27 9.1
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 27 9.1
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 89.8 bits (213), Expect = 2e-18
Identities = 39/57 (68%), Positives = 48/57 (84%)
Frame = +2
Query: 509 IAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFT 679
+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH IICVEDLIHEI T
Sbjct: 139 VTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMT 195
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/56 (51%), Positives = 38/56 (67%)
Frame = +1
Query: 262 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 429
Y KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 56 YAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 111
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +3
Query: 402 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEP 506
+ +K+LQL RLRQI NGVF+++NKATVNMLR EP
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEP 137
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 89.8 bits (213), Expect = 2e-18
Identities = 39/57 (68%), Positives = 48/57 (84%)
Frame = +2
Query: 509 IAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFT 679
+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH IICVEDLIHEI T
Sbjct: 134 VTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMT 190
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/56 (51%), Positives = 38/56 (67%)
Frame = +1
Query: 262 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 429
Y KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 51 YAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 106
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +3
Query: 402 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEP 506
+ +K+LQL RLRQI NGVF+++NKATVNMLR EP
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEP 132
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 88.6 bits (210), Expect = 3e-18
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = +2
Query: 509 IAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFT 679
+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICVEDLIHEI T
Sbjct: 136 VTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMT 192
Score = 64.9 bits (151), Expect = 5e-11
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +1
Query: 262 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 429
Y KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 53 YSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = +3
Query: 402 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEP 506
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EP
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEP 134
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 88.6 bits (210), Expect = 3e-18
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = +2
Query: 509 IAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFT 679
+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICVEDLIHEI T
Sbjct: 136 VTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMT 192
Score = 64.9 bits (151), Expect = 5e-11
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +1
Query: 262 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 429
Y KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 53 YSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = +3
Query: 402 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEP 506
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EP
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEP 134
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 88.6 bits (210), Expect = 3e-18
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = +2
Query: 509 IAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFT 679
+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICVEDLIHEI T
Sbjct: 136 VTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMT 192
Score = 64.9 bits (151), Expect = 5e-11
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +1
Query: 262 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 429
Y KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 53 YSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = +3
Query: 402 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEP 506
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EP
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEP 134
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 87.8 bits (208), Expect = 6e-18
Identities = 38/57 (66%), Positives = 47/57 (82%)
Frame = +2
Query: 509 IAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFT 679
+ +G+PNLKSV+EL+YKRG+ KL+ QRI +T NSIVE+ L KH IIC EDLIHEI T
Sbjct: 134 VTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILT 190
Score = 62.1 bits (144), Expect = 3e-10
Identities = 29/56 (51%), Positives = 38/56 (67%)
Frame = +1
Query: 262 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 429
Y KEY KE++ I L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 51 YSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 106
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = +3
Query: 402 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEP 506
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EP
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEP 132
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 65.7 bits (153), Expect = 3e-11
Identities = 25/55 (45%), Positives = 42/55 (76%)
Frame = +2
Query: 509 IAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEI 673
+ +GYPN KSV++L+YK+G + G +P+T N+I+E+ L +H I+ +EDL++EI
Sbjct: 138 VTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEI 192
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/56 (35%), Positives = 34/56 (60%)
Frame = +1
Query: 262 YVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 429
+V E+R KE D IR+ ++ + + P ++ L F+IRI+G N + PK+ + N L
Sbjct: 55 FVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNL 110
>At2g44735.1 68415.m05566 expressed protein ; expression supported
by MPSS
Length = 248
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 496 SPSLNCLGIPQLKECP*VSIQTW-IRQAEWTTY 591
SPS + QL+ C V I TW + EWTT+
Sbjct: 138 SPSCMVISYTQLRSCGSVLIDTWRPGETEWTTH 170
>At5g59510.1 68418.m07458 expressed protein
Length = 144
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +2
Query: 224 IKKKREIFKRVNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHR 403
+ KK IF+ + +S+ +R+ V T +F KP + SSE + F
Sbjct: 9 VVKKDSIFETTHFSSKPVFTRSFSTKTSSSSSKPVFTRSFSTKPTSYSSSEPIFRRSFSA 68
Query: 404 SP*SS 418
P SS
Sbjct: 69 KPTSS 73
>At5g06740.1 68418.m00762 lectin protein kinase family protein
contains Legume lectins beta-chain signature,
PROSITE:PS00307 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 652
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 357 IGICHPNPWYQPSFTEVRKVL 419
+ CHPNP +PS V KVL
Sbjct: 586 LACCHPNPNQRPSMKTVLKVL 606
>At3g23800.1 68416.m02991 selenium-binding family protein contains
Pfam profile: PF05694 56kDa selenium binding protein
(SBP56)
Length = 480
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -3
Query: 536 SLSWGIPKQLRLG-DT*HIHSSLIQTYKHTIVYLAQSKQLQNFTDFGETWLIP 381
S SWG P G D + L KH VY +L+ D G+T L+P
Sbjct: 208 STSWGAPAAFTKGFDLKDVSDGLYG--KHLHVYSWPQGELKQILDLGDTGLLP 258
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 434 QSKQLQNFTDF-GETWLIPRIRMTNANLASPGT 339
+ KQL+ + G TW+ P I +N ++ SPGT
Sbjct: 126 ERKQLRTHLIWTGGTWIQPEIEESNKSMFSPGT 158
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = +2
Query: 263 TSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 406
T R+ +R + SD K+ V+ T GK HLS E VS F RS
Sbjct: 411 TPRSIKARRALLSD---KNEKVSVTERNGKLGTHLSDEISVSEGFRRS 455
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,949,038
Number of Sequences: 28952
Number of extensions: 272504
Number of successful extensions: 671
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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