Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20581
         (676 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0C9K2 Cluster: Chromosome undetermined scaffold_16, wh...    36   1.2  
UniRef50_UPI0000499E1E Cluster: hypothetical protein 23.t00019; ...    35   2.1  
UniRef50_Q2JSW3 Cluster: Ferric iron uptake ABC transporter (FeT...    33   4.8  
UniRef50_Q9UPN6 Cluster: Putative RNA-binding protein 16; n=35; ...    33   8.4  

>UniRef50_A0C9K2 Cluster: Chromosome undetermined scaffold_16, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_16,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 759

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 6/130 (4%)
 Frame = -2

Query: 483 QLPQSSLKYKMEIKALHSTLNTNIFKVGSSA*IL*SNQLSSSG*WHKDSYFKCKNFQEYS 304
           QL Q+S K + +I A+   + T  F   S+   L   + S++   +   +  C    +  
Sbjct: 445 QLKQTSQKEQEKITAIKIPITTQNFDNNSNTHGLSGEENSTNDTINNHQFSNCHQILQEK 504

Query: 303 HATISLVQIQNLYQYRT----N*RKPKFPPHTAFMTQN-PTPYLRESDLPL-RNPLENKS 142
              I + Q      Y      + ++ K P       QN  TP L+ S L L +NP ENK 
Sbjct: 505 QKIIDISQSLQKQSYSVQNSNSIQQKKSPVRVVQSQQNIMTPALKSSGLSLQKNPQENKQ 564

Query: 141 SCPFSGVSTA 112
           +C F   +T+
Sbjct: 565 NCYFQTNTTS 574


>UniRef50_UPI0000499E1E Cluster: hypothetical protein 23.t00019;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 23.t00019 - Entamoeba histolytica HM-1:IMSS
          Length = 507

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = -3

Query: 512 LRQNNGTCSHSYPSHH*NIKWR*KHSTQH*TLIFLKLVRLRKYYDQINYLQADNGTKIHI 333
           +R +N       P H+ N++++ KH + H + I +KL     Y D+  Y++ DN + + +
Sbjct: 46  IRSHNENLLKKVPWHYNNLQFKMKHQSIHISSINIKL--FPDYLDKQLYIRYDNPSLLKL 103

Query: 332 SNARIF-KNILTRLLALFKFKTCINTE 255
              ++  K  + + L     K+C+  E
Sbjct: 104 HPQQLIEKYCMNQYLKSIPMKSCLKNE 130


>UniRef50_Q2JSW3 Cluster: Ferric iron uptake ABC transporter (FeT)
           family, permease protein; n=14; Bacteria|Rep: Ferric
           iron uptake ABC transporter (FeT) family, permease
           protein - Synechococcus sp. (strain JA-3-3Ab)
           (Cyanobacteria bacteriumYellowstone A-Prime)
          Length = 573

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 592 LRLKIENSTVP*EAFYPLN-WNTLFRGIYDRIMVPVLTV 479
           +RLK+ + ++P   F+PLN W  L   +   I+VPVLTV
Sbjct: 1   MRLKLLSKSLPGSGFFPLNGWALLTLTLSGLILVPVLTV 39


>UniRef50_Q9UPN6 Cluster: Putative RNA-binding protein 16; n=35;
            Tetrapoda|Rep: Putative RNA-binding protein 16 - Homo
            sapiens (Human)
          Length = 1271

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 263  NTERINGNRNSRHIRPL*PKIQ--PRISEKVTYHSETHSKISRPVPSVASAPLTE 105
            N  ++NG    RH +P    +Q  P + EK+T  +E + + S  V  + S P+ E
Sbjct: 1210 NVPQVNGENTERHAQPPPIPVQNDPELYEKLTSSNEINKEKSDTVADIESEPVVE 1264


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 640,400,031
Number of Sequences: 1657284
Number of extensions: 12851528
Number of successful extensions: 35933
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35897
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)