Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20581
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    22   4.0  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   4.0  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   7.0  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   9.2  

>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 558 KRLSTL*IGTHCFVVFTTE*WYLFSQLPQSSL 463
           K L T+ +GT C  + +   W++ +Q+  S +
Sbjct: 32  KVLQTVILGTTCIYLTSLYIWFILTQMTFSGV 63


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 558 KRLSTL*IGTHCFVVFTTE*WYLFSQLPQSSL 463
           K L T+ +GT C  + +   W++ +Q+  S +
Sbjct: 32  KVLQTVILGTTCIYLTSLYIWFILTQMTFSGV 63


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 268 VSIQNELTETEIPATYGLYDPKSNPVS 188
           +S   EL   + P    +Y P S PVS
Sbjct: 26  LSSDEELFHQKCPKPAPIYSPVSKPVS 52


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 203 FWVIKAVCGGNF 238
           FW+I A  G NF
Sbjct: 313 FWIIVAPAGSNF 324


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,664
Number of Sequences: 336
Number of extensions: 3284
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)