Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20581
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   4.3  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   4.3  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   10.0 
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    25   10.0 
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   10.0 
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   10.0 

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 277  SKPVSIQNELTETEIPATYGLYDPKSNPVSQR 182
            S    IQN L E  +   YG  +  SNP+ Q+
Sbjct: 1178 SNEQDIQNNLDEDTVSLAYGTSENASNPLFQK 1209


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 337 IFQMQEFSRIFSRDY*PCSNSKPVSIQNELTETEIPATYGLYDPKS 200
           ++  + F+R    D  P ++S   S   E T+T +  +  +YD  S
Sbjct: 469 VWVTEVFTRYLGDDSTPVTSSSIFSTATEATDTSVQTSSAIYDSSS 514


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 197 PRISEKVTYHSETHSKISRPVPSVAS 120
           P++S+ +  H ET+S+ S     VAS
Sbjct: 562 PQVSKSINGHFETYSRTSMDTDDVAS 587


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
 Frame = -3

Query: 413 FLKLVRLRKYYDQINYLQADNGTKIHISNARIFKNILTRLLAL-FKFKTCINTERINGNR 237
           F KL    +Y  +     +     + ISNA I  N LT+  AL   +++CI T++     
Sbjct: 315 FAKLSSPAEYVSEFEKFSSVCDHGLDISNANI-NNTLTQQFALSAPYESCIVTKKPEPCI 373

Query: 236 NSRHIRPL*PKIQP---RISEKVTYH 168
             +    L PKI+     I+ +VT H
Sbjct: 374 TVKEEEQLAPKIESADLSITPQVTEH 399


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 199 WI--LGHKGRMWREFRFPLIRSVLIQVLNLNKANSRVRIFLKILAFEI 336
           WI  LGH    W+   FP  R +L ++L     + R+   LK+  FE+
Sbjct: 66  WIPFLGHFFNTWQSCSFPPRRYLLAKIL-----SGRISELLKVSPFEL 108


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 640 PTVMWWLAEFTGVTAQLRLKIE 575
           P+++W L EF+ V   +RLK++
Sbjct: 332 PSIIWALFEFSAVALFIRLKMK 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,161
Number of Sequences: 5004
Number of extensions: 57797
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)