Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20581
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1301 + 35564106-35564368,35564479-35564560,35564831-355650...    29   3.4  
01_06_1342 - 36438869-36439459,36439567-36439627,36440751-364411...    29   3.4  
06_03_0568 + 22351552-22351679,22352176-22352227,22353044-223531...    29   4.5  
04_03_0972 + 21347212-21347284,21347966-21348009,21348153-213482...    29   4.5  
02_05_0609 - 30335054-30335374,30335491-30335870,30336102-303364...    29   4.5  
11_06_0370 + 22768977-22769523,22769619-22770642,22770784-227711...    28   5.9  
05_03_0258 - 11153709-11156090                                         28   7.8  
01_05_0157 + 18699566-18699853,18699956-18700061,18700268-187007...    28   7.8  

>02_05_1301 +
           35564106-35564368,35564479-35564560,35564831-35565026,
           35565286-35565415,35565508-35565695,35565856-35565944,
           35566841-35567023
          Length = 376

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 134 PSVASAPLTEPIPLKLSLWHSGNV--TNCEVNCHSGVSCMAR*P 9
           P     PL+  +PL++SLW    V  ++ E N H    CM+  P
Sbjct: 276 PDATLDPLSLHVPLQISLWSEQGVVLSSKETNGHQPSGCMSSNP 319


>01_06_1342 -
           36438869-36439459,36439567-36439627,36440751-36441130,
           36441955-36442761
          Length = 612

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -3

Query: 398 RLRKYYDQINYLQADNGTKIHISNARIFKNILTRLLALFKFKTCINTERINGNRNS 231
           R R+YY Q+  + A   T    SNA  F  +  R +A  K   C+ +  +N  RN+
Sbjct: 273 RYRQYYQQVQAVMASFETVAGFSNAAPFAALALRAMA--KHFKCLKSMILNQLRNT 326


>06_03_0568 +
           22351552-22351679,22352176-22352227,22353044-22353117,
           22353233-22353322,22353833-22353976,22354885-22354973,
           22355539-22355612,22357233-22357317,22357677-22357952,
           22358392-22358420
          Length = 346

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -2

Query: 174 LPLRNPLENKSSCPFSGVSTANRTNTVETVI 82
           LPL +P +   S PFS + T++R N++E ++
Sbjct: 275 LPLPSPHQQHISIPFSVLLTSHRNNSLEPIM 305


>04_03_0972 +
           21347212-21347284,21347966-21348009,21348153-21348237,
           21348810-21349358,21350291-21350416,21350772-21350936,
           21351243-21351310,21351529-21351618,21351740-21351830,
           21352214-21352812
          Length = 629

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 286 CSNSKPVSIQNELTETEIPATYGLYDP 206
           CSN    +I + L   +IPAT G  DP
Sbjct: 409 CSNGDSTTISSTLVNVKIPATPGYVDP 435


>02_05_0609 -
           30335054-30335374,30335491-30335870,30336102-30336443,
           30336551-30336700,30336781-30336878,30336986-30337045,
           30337140-30337211,30337337-30337480,30337584-30337655,
           30337767-30337899,30338076-30338181
          Length = 625

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 554 GFLPSKLEHTVSW-YLRQNNGTCSHSYPSHH*NI 456
           G +P+ + H  S  YLR NN T S +YPS   N+
Sbjct: 137 GGIPNSVGHLESLQYLRLNNNTLSGAYPSSSANL 170


>11_06_0370 +
           22768977-22769523,22769619-22770642,22770784-22771170,
           22771216-22771507
          Length = 749

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 106 SVSGADATEGTGRLIFEWVSEW*VTFSEIRGWILGHKGRM 225
           S+  A  + G   L F+W+SE     S I+ +I+ H  R+
Sbjct: 346 SICAAKNSSGDAFLEFQWISEVATDASAIKNFIMNHSMRL 385


>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 243 KPKFPPHTAFMTQNPTPYLRESDLPLRNPLENKSSCP 133
           K + PPHT  +   P P    S LPL + L + ++ P
Sbjct: 20  KKRPPPHTVLLPATPPPPPSRSSLPLDSLLLHLTAAP 56


>01_05_0157 +
           18699566-18699853,18699956-18700061,18700268-18700712,
           18700852-18700880,18701014-18701207,18701497-18702211,
           18702552-18702571
          Length = 598

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = +2

Query: 356 PLEDN*FDHSIYADEPTLKILVFNVEWSAFISILYFSDDWGNCENRYHYSV 508
           P ED   D     DE  L IL   +    FIS +  SDDW N  N   + +
Sbjct: 232 PFEDE--DEDEDEDEIPLDILEGELAEPEFISAISTSDDWTNFRNTLAHGI 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,794,867
Number of Sequences: 37544
Number of extensions: 337745
Number of successful extensions: 883
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)