Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20581
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_51546| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)               28   7.9  

>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 461  NIKWR*KHSTQH*TLIFLKLVRLRKYYDQINYLQ 360
            N+K R +HS  +    F K + LR+ YD++ YL+
Sbjct: 1876 NVKERLEHSQTNANKTFEKDISLRQLYDEVVYLR 1909


>SB_51546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 420

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 239 RNSRHIRPL*PKIQPRISEKVTYHSETHSKISRP 138
           RN RH+R    ++QP   E++  H  + S+ ++P
Sbjct: 223 RNKRHLRKTREQMQPPQPEEIEIHGPSSSRPAKP 256


>SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)
          Length = 1215

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -3

Query: 209 PKIQPRISEKVTYHS--ETHSKISRPVPSVASAPLTEPIPL 93
           P+   ++S     H    T + +S PVPS  S+PL   +P+
Sbjct: 814 PEYIDQVSSSPPQHDYMPTQASVSSPVPSPPSSPLVSAVPI 854


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,105,198
Number of Sequences: 59808
Number of extensions: 413653
Number of successful extensions: 1152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)