Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20581
(676 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC070071-1|AAH70071.1| 1271|Homo sapiens RBM16 protein protein. 33 1.2
AL833928-1|CAD38784.1| 614|Homo sapiens hypothetical protein pr... 33 1.2
AL591499-2|CAH70694.1| 1271|Homo sapiens RNA binding motif prote... 33 1.2
AL136976-1|CAI21482.1| 1271|Homo sapiens RNA binding motif prote... 33 1.2
AL121952-2|CAI21474.1| 1271|Homo sapiens RNA binding motif prote... 33 1.2
AK023859-1|BAB14705.1| 354|Homo sapiens protein ( Homo sapiens ... 33 1.2
AB209674-1|BAD92911.1| 1947|Homo sapiens T-cell lymphoma invasio... 33 1.2
AB029039-1|BAA83068.2| 1330|Homo sapiens KIAA1116 protein protein. 33 1.2
BC050537-1|AAH50537.2| 463|Homo sapiens FLJ20160 protein protein. 32 1.6
AK127176-1|BAC86869.1| 791|Homo sapiens protein ( Homo sapiens ... 32 1.6
AK000167-1|BAA90987.1| 463|Homo sapiens protein ( Homo sapiens ... 32 1.6
AC093388-1|AAY24173.1| 463|Homo sapiens unknown protein. 32 1.6
X07979-1|CAA30790.1| 798|Homo sapiens protein ( Human mRNA for ... 30 8.6
BX537407-1|CAD97649.1| 823|Homo sapiens hypothetical protein pr... 30 8.6
BC020057-1|AAH20057.1| 798|Homo sapiens integrin, beta 1 (fibro... 30 8.6
AL365203-2|CAI14426.1| 798|Homo sapiens integrin, beta 1 (fibro... 30 8.6
>BC070071-1|AAH70071.1| 1271|Homo sapiens RBM16 protein protein.
Length = 1271
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 263 NTERINGNRNSRHIRPL*PKIQ--PRISEKVTYHSETHSKISRPVPSVASAPLTE 105
N ++NG RH +P +Q P + EK+T +E + + S V + S P+ E
Sbjct: 1210 NVPQVNGENTERHAQPPPIPVQNDPELYEKLTSSNEINKEKSDTVADIESEPVVE 1264
>AL833928-1|CAD38784.1| 614|Homo sapiens hypothetical protein
protein.
Length = 614
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 263 NTERINGNRNSRHIRPL*PKIQ--PRISEKVTYHSETHSKISRPVPSVASAPLTE 105
N ++NG RH +P +Q P + EK+T +E + + S V + S P+ E
Sbjct: 553 NVPQVNGENTERHAQPPPIPVQNDPELYEKLTSSNEINKEKSDTVADIESEPVVE 607
>AL591499-2|CAH70694.1| 1271|Homo sapiens RNA binding motif protein 16
protein.
Length = 1271
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 263 NTERINGNRNSRHIRPL*PKIQ--PRISEKVTYHSETHSKISRPVPSVASAPLTE 105
N ++NG RH +P +Q P + EK+T +E + + S V + S P+ E
Sbjct: 1210 NVPQVNGENTERHAQPPPIPVQNDPELYEKLTSSNEINKEKSDTVADIESEPVVE 1264
>AL136976-1|CAI21482.1| 1271|Homo sapiens RNA binding motif protein 16
protein.
Length = 1271
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 263 NTERINGNRNSRHIRPL*PKIQ--PRISEKVTYHSETHSKISRPVPSVASAPLTE 105
N ++NG RH +P +Q P + EK+T +E + + S V + S P+ E
Sbjct: 1210 NVPQVNGENTERHAQPPPIPVQNDPELYEKLTSSNEINKEKSDTVADIESEPVVE 1264
>AL121952-2|CAI21474.1| 1271|Homo sapiens RNA binding motif protein 16
protein.
Length = 1271
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 263 NTERINGNRNSRHIRPL*PKIQ--PRISEKVTYHSETHSKISRPVPSVASAPLTE 105
N ++NG RH +P +Q P + EK+T +E + + S V + S P+ E
Sbjct: 1210 NVPQVNGENTERHAQPPPIPVQNDPELYEKLTSSNEINKEKSDTVADIESEPVVE 1264
>AK023859-1|BAB14705.1| 354|Homo sapiens protein ( Homo sapiens
cDNA FLJ13797 fis, clone THYRO1000121, highly similar to
Rattus norvegicus CTD-binding SR-like protein rA8 mRNA.
).
Length = 354
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 263 NTERINGNRNSRHIRPL*PKIQ--PRISEKVTYHSETHSKISRPVPSVASAPLTE 105
N ++NG RH +P +Q P + EK+T +E + + S V + S P+ E
Sbjct: 293 NVPQVNGENTERHAQPPPIPVQNDPELYEKLTSSNEINKEKSDTVADIESEPVVE 347
>AB209674-1|BAD92911.1| 1947|Homo sapiens T-cell lymphoma invasion
and metastasis 2 variant protein.
Length = 1947
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 263 NTERINGNRNSRHIRPL*PKIQ--PRISEKVTYHSETHSKISRPVPSVASAPLTE 105
N ++NG RH +P +Q P + EK+T +E + + S V + S P+ E
Sbjct: 171 NVPQVNGENTERHAQPPPIPVQNDPELYEKLTSSNEINKEKSDTVADIESEPVVE 225
>AB029039-1|BAA83068.2| 1330|Homo sapiens KIAA1116 protein protein.
Length = 1330
Score = 32.7 bits (71), Expect = 1.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 263 NTERINGNRNSRHIRPL*PKIQ--PRISEKVTYHSETHSKISRPVPSVASAPLTE 105
N ++NG RH +P +Q P + EK+T +E + + S V + S P+ E
Sbjct: 1269 NVPQVNGENTERHAQPPPIPVQNDPELYEKLTSSNEINKEKSDTVADIESEPVVE 1323
>BC050537-1|AAH50537.2| 463|Homo sapiens FLJ20160 protein protein.
Length = 463
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 209 PKIQPRISEKVTYHSETHSKISRPVPSVASAP 114
P+I+PR+ K T H E +++P V+S+P
Sbjct: 335 PRIEPRLPPKKTKHQEEQEDVNKPAWGVSSSP 366
>AK127176-1|BAC86869.1| 791|Homo sapiens protein ( Homo sapiens
cDNA FLJ45241 fis, clone BRCOC2006164. ).
Length = 791
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 209 PKIQPRISEKVTYHSETHSKISRPVPSVASAP 114
P+I+PR+ K T H E +++P V+S+P
Sbjct: 663 PRIEPRLPPKKTKHQEEQEDVNKPAWGVSSSP 694
>AK000167-1|BAA90987.1| 463|Homo sapiens protein ( Homo sapiens
cDNA FLJ20160 fis, clone COL09072. ).
Length = 463
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 209 PKIQPRISEKVTYHSETHSKISRPVPSVASAP 114
P+I+PR+ K T H E +++P V+S+P
Sbjct: 335 PRIEPRLPPKKTKHQEEQEDVNKPAWGVSSSP 366
>AC093388-1|AAY24173.1| 463|Homo sapiens unknown protein.
Length = 463
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 209 PKIQPRISEKVTYHSETHSKISRPVPSVASAP 114
P+I+PR+ K T H E +++P V+S+P
Sbjct: 335 PRIEPRLPPKKTKHQEEQEDVNKPAWGVSSSP 366
>X07979-1|CAA30790.1| 798|Homo sapiens protein ( Human mRNA for
integrin beta 1 subunit. ).
Length = 798
Score = 29.9 bits (64), Expect = 8.6
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 219 AFMTQNPTPYLRESDLPLRNPLENKSSC--PFSGVSTANRTNTVETVIVALGK 67
+F+ + PY+ + LRNP ++ +C PFS + + TN E +GK
Sbjct: 186 SFVEKTVMPYISTTPAKLRNPCTSEQNCTTPFSYKNVLSLTNKGEVFNELVGK 238
>BX537407-1|CAD97649.1| 823|Homo sapiens hypothetical protein
protein.
Length = 823
Score = 29.9 bits (64), Expect = 8.6
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 219 AFMTQNPTPYLRESDLPLRNPLENKSSC--PFSGVSTANRTNTVETVIVALGK 67
+F+ + PY+ + LRNP ++ +C PFS + + TN E +GK
Sbjct: 211 SFVEKTVMPYISTTPAKLRNPCTSEQNCTSPFSYKNVLSLTNKGEVFNELVGK 263
>BC020057-1|AAH20057.1| 798|Homo sapiens integrin, beta 1
(fibronectin receptor, beta polypeptide, antigen CD29
includes protein.
Length = 798
Score = 29.9 bits (64), Expect = 8.6
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 219 AFMTQNPTPYLRESDLPLRNPLENKSSC--PFSGVSTANRTNTVETVIVALGK 67
+F+ + PY+ + LRNP ++ +C PFS + + TN E +GK
Sbjct: 186 SFVEKTVMPYISTTPAKLRNPCTSEQNCTSPFSYKNVLSLTNKGEVFNELVGK 238
>AL365203-2|CAI14426.1| 798|Homo sapiens integrin, beta 1
(fibronectin receptor, beta polypeptide, antigen CD29
includes protein.
Length = 798
Score = 29.9 bits (64), Expect = 8.6
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 219 AFMTQNPTPYLRESDLPLRNPLENKSSC--PFSGVSTANRTNTVETVIVALGK 67
+F+ + PY+ + LRNP ++ +C PFS + + TN E +GK
Sbjct: 186 SFVEKTVMPYISTTPAKLRNPCTSEQNCTSPFSYKNVLSLTNKGEVFNELVGK 238
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,574,964
Number of Sequences: 237096
Number of extensions: 1931435
Number of successful extensions: 4339
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4339
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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