Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20581
         (676 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118621-1|AAM49990.1| 1168|Drosophila melanogaster RE03558p pro...    29   4.4  
AE014296-813|AAF47875.2| 1168|Drosophila melanogaster CG1273-PB ...    29   4.4  
AE014297-963|AAF54394.4| 1173|Drosophila melanogaster CG9381-PC,...    29   7.7  

>AY118621-1|AAM49990.1| 1168|Drosophila melanogaster RE03558p protein.
          Length = 1168

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 164  ETHSKISRPVPSVASAPLTEPIPLKLSLWHSGNV 63
            ET    S P P  A AP   P+P K+S+    N+
Sbjct: 1110 ETQRSASAPAPLAAPAPAPAPLPGKISIRRKSNL 1143


>AE014296-813|AAF47875.2| 1168|Drosophila melanogaster CG1273-PB
            protein.
          Length = 1168

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 164  ETHSKISRPVPSVASAPLTEPIPLKLSLWHSGNV 63
            ET    S P P  A AP   P+P K+S+    N+
Sbjct: 1110 ETQRSASAPAPLAAPAPAPAPLPGKISIRRKSNL 1143


>AE014297-963|AAF54394.4| 1173|Drosophila melanogaster CG9381-PC,
           isoform C protein.
          Length = 1173

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = -2

Query: 276 QNLYQYRTN*RKPKFPPHTAFMTQNPTPYLRESDLPLRNPLENK-SSCPFSGVSTANRTN 100
           Q  YQY+   R    PPH      +P        LPL     N  ++  F+  ST   TN
Sbjct: 330 QYQYQYQYQYRYQYHPPHQYHPLHSPQQQTNRQSLPLTRTNSNSINATTFN--STNPTTN 387

Query: 99  TVETVIVALGKC 64
           +  T +V +  C
Sbjct: 388 SNPTDVVNVNSC 399


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,814,753
Number of Sequences: 53049
Number of extensions: 601507
Number of successful extensions: 1627
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1627
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)