Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20581
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.7  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   3.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.1  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 240 PKFPPHTAFMTQNPTPYLRESD 175
           P+FPP+     +N T Y  + D
Sbjct: 78  PRFPPYNRMDMRNATYYQHQQD 99


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/39 (20%), Positives = 20/39 (51%)
 Frame = -3

Query: 209 PKIQPRISEKVTYHSETHSKISRPVPSVASAPLTEPIPL 93
           PKI   +S    +++  + K+   + ++   P+  P+P+
Sbjct: 312 PKIISSLSNNTIHNNNYNKKLYYNIINIEQIPVPVPVPI 350


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 107 EPIPLKLSLWHSGNVTNCEV 48
           +PI   LS  H+ NVT C +
Sbjct: 702 QPIGKALSKCHNRNVTTCNM 721


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,223
Number of Sequences: 438
Number of extensions: 4264
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)