Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20580
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 78 1e-15
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 47 3e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 46 5e-06
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 46 7e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 40 3e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 40 3e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 40 5e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 39 8e-04
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 38 0.002
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 37 0.002
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 37 0.003
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 37 0.003
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.006
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 36 0.006
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 36 0.007
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 35 0.010
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 34 0.017
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.030
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 33 0.030
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 32 0.069
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 32 0.069
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 32 0.091
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 30 0.28
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 29 0.64
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 28 1.1
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.0
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 2.0
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.0
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 27 2.6
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 2.6
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 4.5
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 26 6.0
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 6.0
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 26 6.0
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 7.9
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 7.9
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 78.2 bits (184), Expect = 1e-15
Identities = 51/142 (35%), Positives = 72/142 (50%), Gaps = 8/142 (5%)
Frame = +3
Query: 84 TTDNQLNGNAENGGGDSQDHNSAAAPGR---DDDRCEXXXXXXXXXEDAMKTFCWWAELG 254
T DN +G EN D+ + N +A G + + ED K F
Sbjct: 117 TWDNAEDG--ENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDG-KMFIGGLNWE 173
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
TTD LRD+F +GE+ V D TGRSRGF F+ FK P+ +++VM+ EH ++ K +
Sbjct: 174 TTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKII 232
Query: 435 DPKKAKARH-----GKIFVGGL 485
DPK+A R K+FVGG+
Sbjct: 233 DPKRAIPREEQEKTAKMFVGGV 254
Score = 62.9 bits (146), Expect = 4e-11
Identities = 28/62 (45%), Positives = 40/62 (64%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRAT 691
RNFF++FG +L+ + DK + +GF F+T+E+E V + P T GK V+VKRAT
Sbjct: 264 RNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRAT 323
Query: 692 PK 697
PK
Sbjct: 324 PK 325
Score = 48.8 bits (111), Expect = 7e-07
Identities = 23/79 (29%), Positives = 40/79 (50%)
Frame = +3
Query: 213 EDAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 392
E K F T++E R+ F +G + + D +TGR RGF F+ ++ +++
Sbjct: 244 EKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEA 303
Query: 393 VMAAGEHTINNKKVDPKKA 449
M+ TI+ K V+ K+A
Sbjct: 304 TMSQPYITIHGKPVEVKRA 322
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/63 (33%), Positives = 40/63 (63%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R++F +FG +L+ + D T + +GF F+TF++ VN+++ + + GK +D KRA
Sbjct: 179 LRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-SKEHHLDGKIIDPKRA 237
Query: 689 TPK 697
P+
Sbjct: 238 IPR 240
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 46.8 bits (106), Expect = 3e-06
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 416
TTD +L++HFG G+I + + T +TG+ +GF F+ F ++ K M G ++
Sbjct: 239 TTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 46.0 bits (104), Expect = 5e-06
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 419
T+ +L FG G+I+SI + TDP +GR +GF ++ F +S K + H I
Sbjct: 378 TEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFI 431
Score = 41.1 bits (92), Expect = 1e-04
Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 1/129 (0%)
Frame = +3
Query: 54 ANNDNFAQDITTDNQLNGNAENGGGDSQDHNSAAAPGRDDDRCEXXXXXXXXXEDAMKTF 233
+++D+ ++ +D+ + +E+ S+D A ++R + F
Sbjct: 210 SSSDSSSESGDSDSSSDSESESS---SEDEKKRKAEPASEERPAKITKPSQDSNETCTVF 266
Query: 234 CWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GE 410
D+ L F YG I V D +GRS+G+ ++ F+ PE+ +AA G
Sbjct: 267 VGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGT 326
Query: 411 HTINNKKVD 437
I+ + V+
Sbjct: 327 KEIDGRMVN 335
Score = 29.5 bits (63), Expect = 0.49
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVD 676
F E+GTI+ + D + KG+ ++ FE+ + K G KE+D
Sbjct: 283 FEEYGTIVGARVIMDGQSGRSKGYGYVDFETP----EAAKAAVAANGTKEID 330
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITF 607
F G I + +P D + KGF ++TF
Sbjct: 386 FGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 45.6 bits (103), Expect = 7e-06
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 395
DA + + T +EL+ HF + G + + + D TG +GFA+I F P +
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
Query: 396 MAAGEHTINNK--KVDPKK 446
+ ++ + KV PK+
Sbjct: 113 LLLNGSMLHERPLKVTPKR 131
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
D+ L+ F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 377 DERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 39.9 bits (89), Expect = 3e-04
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 368
T ++ELRD F +G I+ + + D TGR++GFAF+ +
Sbjct: 213 TREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 29.9 bits (64), Expect = 0.37
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
+R+ F FG I V + DK + KGF F+++
Sbjct: 218 LRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 39.5 bits (88), Expect = 5e-04
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 410
++ L +FG G I+ + + DP T +GFA+I FK +DK + E
Sbjct: 283 EEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNE 332
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 38.7 bits (86), Expect = 8e-04
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES--IDKVMAAGEHTI-NNKKVDP 440
L+ HF G++ S+ + TD +GR +G+AF+ F P++ I K + HTI +K++
Sbjct: 108 LQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALKF-HHTIYKERKINI 166
Query: 441 KKAKARHGK 467
+ GK
Sbjct: 167 ELTAGGGGK 175
Score = 30.3 bits (65), Expect = 0.28
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITF 607
F G + V +P DKT ++KG+ F+ F
Sbjct: 112 FKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 386
T ++LR HF ++GE+ +++K +P TG S G I F SI
Sbjct: 106 TSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSI 148
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 371
T + ++ F YG IE I V + TG+S G+AF+VF+
Sbjct: 111 TKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEPVVNDLLKTPKRTKGGKEVDV 679
+++ F FG + +V MP DK N KGF +I F +++ V L+ + G+ + V
Sbjct: 339 LKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHV 396
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
T+ +L D FG + SI + DP T RSRGF ++ F+ +++ +A + + V
Sbjct: 106 TENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGRPVR 163
Query: 438 PKKAKAR 458
A+ R
Sbjct: 164 ITVAEPR 170
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 35.9 bits (79), Expect = 0.006
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T +L + F G I+ V T+P TG +RG+ F+ F E D AA E + NKK+
Sbjct: 16 TKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAKE--LKNKKL 71
Score = 34.7 bits (76), Expect = 0.013
Identities = 24/92 (26%), Positives = 37/92 (40%)
Frame = +3
Query: 96 QLNGNAENGGGDSQDHNSAAAPGRDDDRCEXXXXXXXXXEDAMKTFCWWAELGTTDKELR 275
+L G +E G + D + D + ED + F T++EL
Sbjct: 237 ELAGESEEEGSNVDDVEDSGDSSSDKNSINHEIRDNEGLEDTV--FVRNLLFECTEQELY 294
Query: 276 DHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 371
+HF +G + + DP T RS G FI F+
Sbjct: 295 NHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTK-GGKEVDVKR 685
+ NFFS+ G I + + + +G+ F+TF K K K G+ + +
Sbjct: 21 LTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDF 80
Query: 686 ATPK 697
ATP+
Sbjct: 81 ATPR 84
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 35.9 bits (79), Expect = 0.006
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 392
T D++L F +G+I S V D TG S +AFI F ES++K
Sbjct: 255 TQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 35.5 bits (78), Expect = 0.007
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKT 643
+R +FS+FG +L + M ++ K + FI FES V N + +T
Sbjct: 121 MRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAET 165
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 35.1 bits (77), Expect = 0.010
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRK----GFCFITFESEPVVNDLLKTPK-RTKGGKEV 673
IR+ F GT+ +V +PF + + + G F+TF ++ V+ ++T +T +E+
Sbjct: 60 IRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREI 119
Query: 674 DVKRATP 694
V++A P
Sbjct: 120 VVQKARP 126
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSR----GFAFIVFKAPES 383
D + F T E+R F G + + + +R G AF+ F E
Sbjct: 42 DDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQED 101
Query: 384 IDKVMAAGEHTINNKKVDPKK 446
+DK + T+N K +D ++
Sbjct: 102 VDKAI----ETLNGKTLDDRE 118
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 34.3 bits (75), Expect = 0.017
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T +L D F +G I S + PN+G S+G+ F+ F+ E+ + T+N V
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA----AVRAKDTLNGMMV 450
Query: 435 DPKK 446
K+
Sbjct: 451 GKKR 454
Score = 26.6 bits (56), Expect = 3.4
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESI----------NVKTDPNTGRSRG--FAFIVFKAPESIDKVMA 401
+D+E+ HF YG++ESI K P G + F+ F ESI++V+
Sbjct: 29 SDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFVNAESIEEVLK 88
Query: 402 -AGEHTINNKKVDPKKAKARHGKI 470
A T+ +K+ K K+
Sbjct: 89 DAKGMTLGQRKLTIKARVVNPAKL 112
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.5 bits (73), Expect = 0.030
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 401
T +EL D F G + + D +GRS+G A++ F +S+ +A
Sbjct: 252 TSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA 299
Score = 33.1 bits (72), Expect = 0.040
Identities = 14/42 (33%), Positives = 29/42 (69%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 383
TD++++ F +G+IE ++++ D + RS+GF +I ++ P S
Sbjct: 352 TDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPIS 392
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 33.5 bits (73), Expect = 0.030
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 282 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 383
F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 51 FSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
Score = 31.9 bits (69), Expect = 0.091
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESE 616
FSEFG +++ + DK + KGF F+ +E +
Sbjct: 51 FSEFGEPVDINLVRDKETGKSKGFAFLKYEDQ 82
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 32.3 bits (70), Expect = 0.069
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 249 LGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINN 425
+G T ++L + F +G I+S + + P+T S+G+ F+ F P E++ +
Sbjct: 431 VGNT-QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGK 489
Query: 426 KKVDPKKAKARHGK 467
K++ A+ R +
Sbjct: 490 KRLFVNYAEKREDR 503
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 32.3 bits (70), Expect = 0.069
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 380
+ EL+ F +G + + + +P T SRGF F+ F E
Sbjct: 114 EDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE 153
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 613
++ FS+FGT+ V + + +GF F++F +
Sbjct: 117 LQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFST 151
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 31.9 bits (69), Expect = 0.091
Identities = 14/66 (21%), Positives = 34/66 (51%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 440
+K++ F YG++ES+ + N + +GF ++V + + ++A + N+ ++
Sbjct: 770 EKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVVMTTNQDAENALSAAGKQLGNRVLNV 827
Query: 441 KKAKAR 458
+K R
Sbjct: 828 VLSKPR 833
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 30.3 bits (65), Expect = 0.28
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK----APESIDKV 395
T+D+ L D F G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 291 TSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 29.1 bits (62), Expect = 0.64
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 291 YGEIESINVKTDPNTGRSRGFAFIVF 368
Y +S + TDP T SRG+ F+ F
Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFVRF 235
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/71 (21%), Positives = 31/71 (43%)
Frame = +3
Query: 273 RDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 452
R++ GE+E V +P + ++F K+ A +++ +++DP K
Sbjct: 344 RENLLEVGEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFERIDPAKVS 403
Query: 453 ARHGKIFVGGL 485
A + GG+
Sbjct: 404 ALQQMLIAGGV 414
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEPVVNDLLKTPKRTKGGKE--VDV 679
I F +G I + MP K KG+C+I + + N + K G+E V +
Sbjct: 115 IAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELDGEELFVSI 174
Query: 680 KR 685
KR
Sbjct: 175 KR 176
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 345 RGFAFIVFKAPESIDKVMAAGEHTINNKK 431
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPK 649
IR+FFS+FG + +VE+ N C + F S N+ +P+
Sbjct: 259 IRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPE 299
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTK 658
+R+ +S FGT+ V + D +K ++ + I FE+ + K +K
Sbjct: 184 LRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFETLSSAYSAINAEKPSK 233
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 291 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNK 428
+G++ S + + G S+GF F FK P + ++ G+ T NK
Sbjct: 333 FGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDGKDTYGNK 380
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 371
D+ L F Y + V D G++RGF F+ FK
Sbjct: 43 DESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK 78
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 240 WAELGTTDKELRDHFGAYGEIESINVKTDPNT 335
WA G+ + Y E+ES++VK++ +T
Sbjct: 157 WAGYGSEQSSSPLEYSEYEEVESLDVKSEKDT 188
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -1
Query: 452 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTV 291
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 258 TDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVFKAP 377
T+ ++++ F + G + +++ PN GRS+G A I+F P
Sbjct: 67 TEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 7.9
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +3
Query: 240 WAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 419
WA L +D+EL G Y + K D T +++G A + AP D++ GE T+
Sbjct: 337 WAHLSPSDEELGKELGKYKD------KLDEQTFKAKGNA-LTMAAPLPDDEI-EDGE-TM 387
Query: 420 NNKKVD--PKKAKAR 458
+ +K + P+ KA+
Sbjct: 388 DGQKAEAVPEIKKAK 402
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -1
Query: 488 AESSDKNLPMSCFSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYIN 309
++ L M C +++ F +F S ++V +GLK++ SA V I + N
Sbjct: 1191 SDEETTQLAMDCLAVMAKRFSASPELFISPIEVVSGPYGLKNSARDVQVSAIVCITVLTN 1250
Query: 308 TL 303
TL
Sbjct: 1251 TL 1252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,321
Number of Sequences: 5004
Number of extensions: 53194
Number of successful extensions: 197
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -