Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20580
(701 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 78 7e-15
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 78 7e-15
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 72 5e-13
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 72 5e-13
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 68 6e-12
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 68 6e-12
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 68 6e-12
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 61 7e-10
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 61 7e-10
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 53 2e-07
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 53 2e-07
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 53 2e-07
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 51 7e-07
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 48 9e-06
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 46 3e-05
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 45 5e-05
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 44 1e-04
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 42 3e-04
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 42 3e-04
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 42 3e-04
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 42 3e-04
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 42 4e-04
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 40 0.001
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 40 0.001
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 40 0.001
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 40 0.001
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 40 0.002
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 39 0.004
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 39 0.004
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 38 0.009
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 37 0.016
Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical pr... 36 0.037
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 36 0.037
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 35 0.049
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 35 0.049
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 35 0.049
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 35 0.065
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 35 0.065
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 35 0.065
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 35 0.065
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 35 0.065
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 35 0.065
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 35 0.065
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 35 0.065
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 35 0.065
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 35 0.065
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 35 0.065
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 35 0.065
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 34 0.086
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 34 0.086
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 34 0.11
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 34 0.11
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 34 0.11
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 33 0.15
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 32 0.35
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 32 0.35
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 32 0.35
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 32 0.35
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 32 0.46
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 32 0.46
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 32 0.46
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 31 1.1
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 31 1.1
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 31 1.1
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 31 1.1
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 31 1.1
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 30 1.4
L07144-4|AAK21440.2| 187|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z19154-9|CAA79552.2| 559|Caenorhabditis elegans Hypothetical pr... 29 3.2
L07144-9|AAK21441.1| 737|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 29 4.3
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 29 4.3
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 28 7.4
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 28 7.4
U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclas... 28 7.4
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 28 7.4
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 28 7.4
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 28 7.4
AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp ass... 28 7.4
Z68879-10|CAA93082.2| 473|Caenorhabditis elegans Hypothetical p... 27 9.8
AF099920-4|AAK29844.2| 363|Caenorhabditis elegans Serpentine re... 27 9.8
AF067619-1|AAC17568.2| 368|Caenorhabditis elegans Hypothetical ... 27 9.8
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 77.8 bits (183), Expect = 7e-15
Identities = 41/100 (41%), Positives = 55/100 (55%), Gaps = 9/100 (9%)
Frame = +3
Query: 213 EDAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 392
+D K F TT + LRD+FG +GE+ V DP T R+RGF FI F P S+DK
Sbjct: 42 QDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDK 101
Query: 393 VMAAGEHTINNKKVDPK---------KAKARHGKIFVGGL 485
V+ EH ++ KK+DPK K + K+F+GGL
Sbjct: 102 VLNNREHELDGKKIDPKVAFPKRTQAKLVTKTKKVFIGGL 141
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/78 (34%), Positives = 41/78 (52%)
Frame = +3
Query: 225 KTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
K F +T ++++ +F YG++E + D T R RGF F+ F + E DKV
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEI 194
Query: 405 GEHTINNKKVDPKKAKAR 458
H IN K V+ KKA+ +
Sbjct: 195 HFHEINGKMVECKKAQPK 212
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/63 (30%), Positives = 36/63 (57%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
++ +F +G + + + FDK + +GF F+TF+S+ V + + + GK V+ K+A
Sbjct: 150 MKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKA 209
Query: 689 TPK 697
PK
Sbjct: 210 QPK 212
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R++F FG + E + D + +GF FITF V+ +L + GK++D K A
Sbjct: 61 LRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVA 120
Query: 689 TPK 697
PK
Sbjct: 121 FPK 123
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 77.8 bits (183), Expect = 7e-15
Identities = 41/100 (41%), Positives = 55/100 (55%), Gaps = 9/100 (9%)
Frame = +3
Query: 213 EDAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 392
+D K F TT + LRD+FG +GE+ V DP T R+RGF FI F P S+DK
Sbjct: 42 QDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDK 101
Query: 393 VMAAGEHTINNKKVDPK---------KAKARHGKIFVGGL 485
V+ EH ++ KK+DPK K + K+F+GGL
Sbjct: 102 VLNNREHELDGKKIDPKVAFPKRTQAKLVTKTKKVFIGGL 141
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/78 (34%), Positives = 41/78 (52%)
Frame = +3
Query: 225 KTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
K F +T ++++ +F YG++E + D T R RGF F+ F + E DKV
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEI 194
Query: 405 GEHTINNKKVDPKKAKAR 458
H IN K V+ KKA+ +
Sbjct: 195 HFHEINGKMVECKKAQPK 212
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/63 (30%), Positives = 36/63 (57%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
++ +F +G + + + FDK + +GF F+TF+S+ V + + + GK V+ K+A
Sbjct: 150 MKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKA 209
Query: 689 TPK 697
PK
Sbjct: 210 QPK 212
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R++F FG + E + D + +GF FITF V+ +L + GK++D K A
Sbjct: 61 LRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVA 120
Query: 689 TPK 697
PK
Sbjct: 121 FPK 123
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 71.7 bits (168), Expect = 5e-13
Identities = 36/76 (47%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 440
+++L HF YGE+ VK D GRSRGFAF+ F E +AA E TI K V+
Sbjct: 42 NEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEV 101
Query: 441 KKAKARHG-KIFVGGL 485
K AK+R K+FVGGL
Sbjct: 102 KPAKSRENKKVFVGGL 117
Score = 57.6 bits (133), Expect = 8e-09
Identities = 25/63 (39%), Positives = 37/63 (58%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R+ F +FG + ++E PFDK R+ F FI FE E + K+T G +E DVK+A
Sbjct: 126 LRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKA 185
Query: 689 TPK 697
P+
Sbjct: 186 VPQ 188
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/74 (37%), Positives = 41/74 (55%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
++++LR HF +G+++ I D T R FAFIVF+ ES DK + + T ++ D
Sbjct: 122 SEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECD 181
Query: 438 PKKAKARHGKIFVG 479
KKA GK F G
Sbjct: 182 VKKA-VPQGKRFPG 194
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/60 (26%), Positives = 34/60 (56%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+ + F+++G + + ++ +D+T + +GF F+ F + L ++T GK V+VK A
Sbjct: 45 LSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPA 104
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 71.7 bits (168), Expect = 5e-13
Identities = 36/76 (47%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 440
+++L HF YGE+ VK D GRSRGFAF+ F E +AA E TI K V+
Sbjct: 42 NEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEV 101
Query: 441 KKAKARHG-KIFVGGL 485
K AK+R K+FVGGL
Sbjct: 102 KPAKSRENKKVFVGGL 117
Score = 57.6 bits (133), Expect = 8e-09
Identities = 25/63 (39%), Positives = 37/63 (58%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R+ F +FG + ++E PFDK R+ F FI FE E + K+T G +E DVK+A
Sbjct: 126 LRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKA 185
Query: 689 TPK 697
P+
Sbjct: 186 VPQ 188
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/74 (37%), Positives = 41/74 (55%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
++++LR HF +G+++ I D T R FAFIVF+ ES DK + + T ++ D
Sbjct: 122 SEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECD 181
Query: 438 PKKAKARHGKIFVG 479
KKA GK F G
Sbjct: 182 VKKA-VPQGKRFPG 194
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/60 (26%), Positives = 34/60 (56%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+ + F+++G + + ++ +D+T + +GF F+ F + L ++T GK V+VK A
Sbjct: 45 LSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPA 104
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 68.1 bits (159), Expect = 6e-12
Identities = 34/85 (40%), Positives = 43/85 (50%)
Frame = +3
Query: 213 EDAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 392
E+ K F TTD +R+ + +GEI I V DP T RSRGF F+ F +D
Sbjct: 20 ENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDA 79
Query: 393 VMAAGEHTINNKKVDPKKAKARHGK 467
M H I+ K VDPK+A R K
Sbjct: 80 AMKQRPHIIDGKTVDPKRAVPRDDK 104
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R F+S+FG I ++ + D T + +GF F+TF + V+ +K GK VD KRA
Sbjct: 39 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 98
Query: 689 TPK 697
P+
Sbjct: 99 VPR 101
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
T+ L ++F YG + + D T + RGF F+ F +S+D+ + H +N + D
Sbjct: 126 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCD 185
Query: 438 PKKAKAR 458
+K ++
Sbjct: 186 VRKGLSK 192
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+ +F+++GT+ + E+ DK + +GF F+TF+ V+ + G DV++
Sbjct: 130 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKG 189
Query: 689 TPK 697
K
Sbjct: 190 LSK 192
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 68.1 bits (159), Expect = 6e-12
Identities = 34/85 (40%), Positives = 43/85 (50%)
Frame = +3
Query: 213 EDAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 392
E+ K F TTD +R+ + +GEI I V DP T RSRGF F+ F +D
Sbjct: 20 ENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDA 79
Query: 393 VMAAGEHTINNKKVDPKKAKARHGK 467
M H I+ K VDPK+A R K
Sbjct: 80 AMKQRPHIIDGKTVDPKRAVPRDDK 104
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R F+S+FG I ++ + D T + +GF F+TF + V+ +K GK VD KRA
Sbjct: 39 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 98
Query: 689 TPK 697
P+
Sbjct: 99 VPR 101
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
T+ L ++F YG + + D T + RGF F+ F +S+D+ + H +N + D
Sbjct: 126 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCD 185
Query: 438 PKKAKAR 458
+K ++
Sbjct: 186 VRKGLSK 192
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+ +F+++GT+ + E+ DK + +GF F+TF+ V+ + G DV++
Sbjct: 130 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKG 189
Query: 689 TPK 697
K
Sbjct: 190 LSK 192
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 68.1 bits (159), Expect = 6e-12
Identities = 34/85 (40%), Positives = 43/85 (50%)
Frame = +3
Query: 213 EDAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 392
E+ K F TTD +R+ + +GEI I V DP T RSRGF F+ F +D
Sbjct: 20 ENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDA 79
Query: 393 VMAAGEHTINNKKVDPKKAKARHGK 467
M H I+ K VDPK+A R K
Sbjct: 80 AMKQRPHIIDGKTVDPKRAVPRDDK 104
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R F+S+FG I ++ + D T + +GF F+TF + V+ +K GK VD KRA
Sbjct: 39 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 98
Query: 689 TPK 697
P+
Sbjct: 99 VPR 101
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
T+ L ++F YG + + D T + RGF F+ F +S+D+ + H +N + D
Sbjct: 126 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCD 185
Query: 438 PKKAKAR 458
+K ++
Sbjct: 186 VRKGLSK 192
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+ +F+++GT+ + E+ DK + +GF F+TF+ V+ + G DV++
Sbjct: 130 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKG 189
Query: 689 TPK 697
K
Sbjct: 190 LSK 192
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 61.3 bits (142), Expect = 7e-10
Identities = 28/66 (42%), Positives = 36/66 (54%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 449
+R+ + +GEI I V DP T RSRGF F+ F +D M H I+ K VDPK+A
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 60
Query: 450 KARHGK 467
R K
Sbjct: 61 VPRDDK 66
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R F+S+FG I ++ + D T + +GF F+TF + V+ +K GK VD KRA
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 60
Query: 689 TPK 697
P+
Sbjct: 61 VPR 63
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
T+ L ++F YG + + D T + RGF F+ F +S+D+ + H +N + D
Sbjct: 88 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCD 147
Query: 438 PKKAKAR 458
+K ++
Sbjct: 148 VRKGLSK 154
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+ +F+++GT+ + E+ DK + +GF F+TF+ V+ + G DV++
Sbjct: 92 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKG 151
Query: 689 TPK 697
K
Sbjct: 152 LSK 154
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 61.3 bits (142), Expect = 7e-10
Identities = 28/66 (42%), Positives = 36/66 (54%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 449
+R+ + +GEI I V DP T RSRGF F+ F +D M H I+ K VDPK+A
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 60
Query: 450 KARHGK 467
R K
Sbjct: 61 VPRDDK 66
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R F+S+FG I ++ + D T + +GF F+TF + V+ +K GK VD KRA
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 60
Query: 689 TPK 697
P+
Sbjct: 61 VPR 63
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
T+ L ++F YG + + D T + RGF F+ F +S+D+ + H +N + D
Sbjct: 88 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCD 147
Query: 438 PKKAKAR 458
+K ++
Sbjct: 148 VRKGLSK 154
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+ +F+++GT+ + E+ DK + +GF F+TF+ V+ + G DV++
Sbjct: 92 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKG 151
Query: 689 TPK 697
K
Sbjct: 152 LSK 154
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/68 (38%), Positives = 37/68 (54%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
TTD++L ++F +G + V DPNT SRGF F+ F + S + M H + K V
Sbjct: 60 TTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTV 119
Query: 435 DPKKAKAR 458
D K+A R
Sbjct: 120 DSKRAIPR 127
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 515 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRATP 694
N+FS++G +++ + D +GF F+TF S + GGK VD KRA P
Sbjct: 67 NYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIP 126
Query: 695 K 697
+
Sbjct: 127 R 127
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/68 (38%), Positives = 37/68 (54%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
TTD++L ++F +G + V DPNT SRGF F+ F + S + M H + K V
Sbjct: 80 TTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTV 139
Query: 435 DPKKAKAR 458
D K+A R
Sbjct: 140 DSKRAIPR 147
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 515 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRATP 694
N+FS++G +++ + D +GF F+TF S + GGK VD KRA P
Sbjct: 87 NYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIP 146
Query: 695 K 697
+
Sbjct: 147 R 147
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/68 (38%), Positives = 37/68 (54%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
TTD++L ++F +G + V DPNT SRGF F+ F + S + M H + K V
Sbjct: 81 TTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTV 140
Query: 435 DPKKAKAR 458
D K+A R
Sbjct: 141 DSKRAIPR 148
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 515 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRATP 694
N+FS++G +++ + D +GF F+TF S + GGK VD KRA P
Sbjct: 88 NYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIP 147
Query: 695 K 697
+
Sbjct: 148 R 148
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/61 (37%), Positives = 35/61 (57%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T +L +F YG I+S+N+ DP+TG RGFA I F + + +K + H I+ +V
Sbjct: 36 TGKSQLEHYFKRYGSIQSVNMFYDPDTGLHRGFASITFDSKDGANKAIEQRPHVIDGDRV 95
Query: 435 D 437
D
Sbjct: 96 D 96
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+ ++F +G+I V M +D +GF ITF+S+ N ++ G VDV+
Sbjct: 41 LEHYFKRYGSIQSVNMFYDPDTGLHRGFASITFDSKDGANKAIEQRPHVIDGDRVDVEPY 100
Query: 689 TP 694
P
Sbjct: 101 IP 102
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 47.6 bits (108), Expect = 9e-06
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 395
DA + + G T +E+ HF G + + ++ D +G +GFA++ F E +
Sbjct: 76 DAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNA 135
Query: 396 MAAGEHTINNK--KVDPKK 446
+A + + + KVDPK+
Sbjct: 136 LAMTDSLLRGRQIKVDPKR 154
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/40 (52%), Positives = 26/40 (65%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 380
D LRDHF ++G I S V D N GRS+GF F+ F+ PE
Sbjct: 356 DDGLRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPE 394
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/40 (52%), Positives = 26/40 (65%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 380
D LRDHF ++G I S V D N GRS+GF F+ F+ PE
Sbjct: 356 DDGLRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPE 394
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 380
TT+K+LRD FG +GEI ++ D +G SRGF FI F E
Sbjct: 87 TTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIE 128
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
+R+ F EFG I + ++ +D+ +GF FI F
Sbjct: 92 LRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYF 124
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T+DK L ++F +G+IE V TD NT +SRG+ F+ K S ++ I+ +K
Sbjct: 46 TSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRKA 105
Query: 435 D 437
+
Sbjct: 106 N 106
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/60 (23%), Positives = 27/60 (45%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+ +F +FG I E + D+ + +G+ F+T + K P G++ +V A
Sbjct: 51 LHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRKANVNLA 110
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +3
Query: 243 AELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
A TT++EL + F + G+I ++ + D TGR RGFAFI F S + +
Sbjct: 12 APFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAV 63
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 515 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 616
NFFS G I V + D+ + +GF FI F E
Sbjct: 23 NFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEE 56
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 380
D L+ F +YG I S V TD N GRS+GF F+ F+ PE
Sbjct: 330 DDGLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPE 368
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 282 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
F +G I S V T G+S+GF F+ F PE + + A
Sbjct: 233 FAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQA 271
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 380
D L+ F +YG I S V TD N GRS+GF F+ F+ PE
Sbjct: 270 DDGLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPE 308
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 282 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
F +G I S V T G+S+GF F+ F PE + + A
Sbjct: 173 FAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQA 211
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 380
D L+ F +YG I S V TD N GRS+GF F+ F+ PE
Sbjct: 267 DDGLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPE 305
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 282 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
F +G I S V T G+S+GF F+ F PE + + A
Sbjct: 170 FAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQA 208
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 380
D L+ F +YG I S V TD N GRS+GF F+ F+ PE
Sbjct: 330 DDGLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPE 368
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 282 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
F +G I S V T G+S+GF F+ F PE + + A
Sbjct: 233 FAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQA 271
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/73 (24%), Positives = 34/73 (46%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 395
DA + + +T E+ +HF G++ + + D TG + FAF+ F+ ES+
Sbjct: 44 DARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLESVQLA 103
Query: 396 MAAGEHTINNKKV 434
+ N+K+
Sbjct: 104 LVLSGTMFRNRKI 116
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 368
T++E+ ++F A G + ++ + D TGR RGFAF+ F
Sbjct: 18 TEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEF 54
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 616
I N+F+ G + V + +D+ + +GF F+ F E
Sbjct: 22 IGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEE 57
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 383
LR F +G I+SIN+ DP TG + FAF+ ++ PE+
Sbjct: 118 LRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEA 155
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 383
LR F +G I+SIN+ DP TG + FAF+ ++ PE+
Sbjct: 118 LRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEA 155
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 383
LR F +G I+SIN+ DP TG + FAF+ ++ PE+
Sbjct: 118 LRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEA 155
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 282 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 383
F YGE+ +IN+ D +TG+S+GFAF+ +K S
Sbjct: 58 FSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRS 91
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESE 616
FS++G ++ + + DK + KGF F+ ++ +
Sbjct: 58 FSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQ 89
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +3
Query: 243 AELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 368
A TT+ +L ++F G + ++ + D TGR RGFAF+ F
Sbjct: 11 APFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEF 52
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 515 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 616
N+FS+ G + V + D+ + +GF F+ F E
Sbjct: 22 NYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEE 55
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 386
T ++L + F A G + + + TD TGRS+G ++ F ES+
Sbjct: 36 TRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESV 79
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVV 625
+ FFS G + +V + D + KG C++ F E V
Sbjct: 41 LEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESV 79
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 386
T ++L + F A G + + + TD TGRS+G ++ F ES+
Sbjct: 181 TRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESV 224
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVV 625
+ FFS G + +V + D + KG C++ F E V
Sbjct: 186 LEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESV 224
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 258 TDKELRDHFGAY-GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T+ L F A G +E++ + D +TG+ +GFAF+ FK S+ +A TI +K
Sbjct: 258 TEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVS--LALSMETIKMEKR 315
Query: 435 DPKKAK 452
D + K
Sbjct: 316 DLRITK 321
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 401
+ ELRD FG G + I + D TG +GFAF+ F++ + + +A
Sbjct: 189 EDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIA 235
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 613
+R+ F + G ++ + + DK KGF F+TFES
Sbjct: 192 LRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFES 226
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 252 GTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMAAGEHTINNK 428
G T +E+R F + GEIES + D TG+S G+ F+ + + +++ V + + NK
Sbjct: 52 GMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNK 111
Query: 429 KVDPKKAKARHGKI 470
+ A+ + +I
Sbjct: 112 TIKVSYARPSNDQI 125
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 267 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 389
EL F +G+I + + +D TG S+G F+ F + D
Sbjct: 143 ELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEAD 183
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 431
T+++LR F YG+I ++K G+ RGFAF+ F S +A T N K
Sbjct: 15 TEQQLRKFFEKYGQISDASLKYTKE-GKFRGFAFVGFLDEGSASNALAKSNQTFFNSK 71
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 383
T + +L+ F YGE+ + V D TG +GFA + F PE+
Sbjct: 290 TKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEA 332
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 395
DA F + +T +E+ +HF G+I + D T + + FA+I F SI+
Sbjct: 53 DAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENA 112
Query: 396 M 398
+
Sbjct: 113 L 113
>Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical
protein F44G4.4a protein.
Length = 411
Score = 35.5 bits (78), Expect = 0.037
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
TTD+ + +F G + +K + G S+GF F+ + +KV+A +H I+ ++
Sbjct: 184 TTDECFQKYFEDIGTVVFCEIKRKSD-GNSKGFGFVRMSSVGEQNKVLAIPQHMIDGRRC 242
Query: 435 DPKKAKAR 458
D K R
Sbjct: 243 DVKVPDGR 250
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVK 682
+ +F + GT++ E+ K+ KGF F+ S N +L P+ G+ DVK
Sbjct: 190 QKYFEDIGTVVFCEIK-RKSDGNSKGFGFVRMSSVGEQNKVLAIPQHMIDGRRCDVK 245
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 345 RGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 458
RGFAF+ + E+ +++++ G T+N V A+ R
Sbjct: 302 RGFAFVTLSSAEAAERIVSKGSLTVNGLSVGLSIAQPR 339
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 35.5 bits (78), Expect = 0.037
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI---NNK 428
T+ ++ D F YG+I++I++ D TG +G+A + ++ + ++ + T N
Sbjct: 67 TEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNV 126
Query: 429 KVD 437
KVD
Sbjct: 127 KVD 129
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLL 637
+ + FSE+G I + + D+ KG+ + +E++ N+ +
Sbjct: 71 VHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAI 113
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 35.1 bits (77), Expect = 0.049
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESI-NVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
+K L D F A+G I + + D ++G S+GFAFI F + E+ D + A
Sbjct: 113 EKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 294 GEIESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINNKKVDPKKAKARHGKI 470
G + S+N+ D T +GF F+ F E D + + K + KA A +
Sbjct: 37 GPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNM 96
Query: 471 FVG 479
VG
Sbjct: 97 DVG 99
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 533 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTK-GGKEVDVKRAT 691
G ++ V MP D+ +GF F+ F E + +K K GK + V +A+
Sbjct: 37 GPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKAS 90
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 35.1 bits (77), Expect = 0.049
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESI-NVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
+K L D F A+G I + + D ++G S+GFAFI F + E+ D + A
Sbjct: 123 EKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 171
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 294 GEIESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINNKKVDPKKAKARHGKI 470
G + S+N+ D T +GF F+ F E D + + K + KA A +
Sbjct: 47 GPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNM 106
Query: 471 FVG 479
VG
Sbjct: 107 DVG 109
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 533 GTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTK-GGKEVDVKRAT 691
G ++ V MP D+ +GF F+ F E + +K K GK + V +A+
Sbjct: 47 GPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKAS 100
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 35.1 bits (77), Expect = 0.049
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 395
DA F + +T +E+ +HF G I + D T + + FA+I F SI+
Sbjct: 59 DAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENA 118
Query: 396 M 398
+
Sbjct: 119 L 119
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 34.7 bits (76), Expect = 0.065
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESID- 389
DA+K F + + R F YG + S N+ D +T S+G F+ F ++I+
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEA 112
Query: 390 -------KVMAAGEHTINNKKVDPKKAKARHGKIFVGGL 485
KV+ H + K D + R K+F+G L
Sbjct: 113 QGALHNIKVIEGMHHPVQMKPADTENRNER--KLFIGQL 149
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
R F ++G++ + DK+ KG CF+TF
Sbjct: 72 RRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 34.7 bits (76), Expect = 0.065
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESID- 389
DA+K F + + R F YG + S N+ D +T S+G F+ F ++I+
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEA 112
Query: 390 -------KVMAAGEHTINNKKVDPKKAKARHGKIFVGGL 485
KV+ H + K D + R K+F+G L
Sbjct: 113 QGALHNIKVIEGMHHPVQMKPADTENRNER--KLFIGQL 149
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
R F ++G++ + DK+ KG CF+TF
Sbjct: 72 RRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 34.7 bits (76), Expect = 0.065
Identities = 19/75 (25%), Positives = 41/75 (54%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
TT+ ELR+HF + ++ + + + G+S+G+ FI F+ + +++ +K+
Sbjct: 77 TTETELREHFEKFFAVKDVKMVKSLD-GQSKGYGFITFETEDQAEEI----------RKL 125
Query: 435 DPKKAKARHGKIFVG 479
PK+ + R K+ +G
Sbjct: 126 TPKQLEFRSRKLNLG 140
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLK-TPKR 652
+R F +F + +V+M Q KG+ FITFE+E ++ K TPK+
Sbjct: 82 LREHFEKFFAVKDVKM-VKSLDGQSKGYGFITFETEDQAEEIRKLTPKQ 129
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 34.7 bits (76), Expect = 0.065
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESID- 389
DA+K F + + R F YG + S N+ D +T S+G F+ F ++I+
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEA 112
Query: 390 -------KVMAAGEHTINNKKVDPKKAKARHGKIFVGGL 485
KV+ H + K D + R K+F+G L
Sbjct: 113 QGALHNIKVIEGMHHPVQMKPADTENRNER--KLFIGQL 149
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
R F ++G++ + DK+ KG CF+TF
Sbjct: 72 RRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 34.7 bits (76), Expect = 0.065
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESID- 389
DA+K F + + R F YG + S N+ D +T S+G F+ F ++I+
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEA 112
Query: 390 -------KVMAAGEHTINNKKVDPKKAKARHGKIFVGGL 485
KV+ H + K D + R K+F+G L
Sbjct: 113 QGALHNIKVIEGMHHPVQMKPADTENRNER--KLFIGQL 149
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
R F ++G++ + DK+ KG CF+TF
Sbjct: 72 RRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 34.7 bits (76), Expect = 0.065
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESID- 389
DA+K F + + R F YG + S N+ D +T S+G F+ F ++I+
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEA 112
Query: 390 -------KVMAAGEHTINNKKVDPKKAKARHGKIFVGGL 485
KV+ H + K D + R K+F+G L
Sbjct: 113 QGALHNIKVIEGMHHPVQMKPADTENRNER--KLFIGQL 149
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
R F ++G++ + DK+ KG CF+TF
Sbjct: 72 RRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 34.7 bits (76), Expect = 0.065
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESID- 389
DA+K F + + R F YG + S N+ D +T S+G F+ F ++I+
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEA 112
Query: 390 -------KVMAAGEHTINNKKVDPKKAKARHGKIFVGGL 485
KV+ H + K D + R K+F+G L
Sbjct: 113 QGALHNIKVIEGMHHPVQMKPADTENRNER--KLFIGQL 149
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
R F ++G++ + DK+ KG CF+TF
Sbjct: 72 RRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 34.7 bits (76), Expect = 0.065
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESID- 389
DA+K F + + R F YG + S N+ D +T S+G F+ F ++I+
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEA 112
Query: 390 -------KVMAAGEHTINNKKVDPKKAKARHGKIFVGGL 485
KV+ H + K D + R K+F+G L
Sbjct: 113 QGALHNIKVIEGMHHPVQMKPADTENRNER--KLFIGQL 149
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
R F ++G++ + DK+ KG CF+TF
Sbjct: 72 RRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 34.7 bits (76), Expect = 0.065
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 440
++E+R F +G++E +++KT NT +AF++F+ + + A E +
Sbjct: 182 EREIRHVFEEHGKVEEVDIKTPINT--DAAYAFVMFQTVD--QAIQAKAEEQDRPIRAGG 237
Query: 441 KKAKARHGK------IFVGGL 485
+ K +GK +FVGGL
Sbjct: 238 SRMKIGYGKSQVSRRLFVGGL 258
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 34.7 bits (76), Expect = 0.065
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 440
++E+R F +G++E +++KT NT +AF++F+ + + A E +
Sbjct: 182 EREIRHVFEEHGKVEEVDIKTPINT--DAAYAFVMFQTVD--QAIQAKAEEQDRPIRAGG 237
Query: 441 KKAKARHGK------IFVGGL 485
+ K +GK +FVGGL
Sbjct: 238 SRMKIGYGKSQVSRRLFVGGL 258
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 34.7 bits (76), Expect = 0.065
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 440
++E+R F +G++E +++KT NT +AF++F+ + + A E +
Sbjct: 159 EREIRHVFEEHGKVEEVDIKTPINT--DAAYAFVMFQTVD--QAIQAKAEEQDRPIRAGG 214
Query: 441 KKAKARHGK------IFVGGL 485
+ K +GK +FVGGL
Sbjct: 215 SRMKIGYGKSQVSRRLFVGGL 235
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 34.7 bits (76), Expect = 0.065
Identities = 19/75 (25%), Positives = 41/75 (54%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
TT+ ELR+HF + ++ + + + G+S+G+ FI F+ + +++ +K+
Sbjct: 78 TTETELREHFEKFFAVKDVKMVKSLD-GQSKGYGFITFETEDQAEEI----------RKL 126
Query: 435 DPKKAKARHGKIFVG 479
PK+ + R K+ +G
Sbjct: 127 TPKQLEFRSRKLNLG 141
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLK-TPKR 652
+R F +F + +V+M Q KG+ FITFE+E ++ K TPK+
Sbjct: 83 LREHFEKFFAVKDVKM-VKSLDGQSKGYGFITFETEDQAEEIRKLTPKQ 130
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 34.3 bits (75), Expect = 0.086
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVD 437
+++L F AYG + S+ + T N S+GF F+ + ES +K AA E + + ++
Sbjct: 64 EQDLAAMFFAYGRVLSVEIVT--NDRGSKGFGFVTLDSIESCEKARAALHESHVQGRIIE 121
Query: 438 PKKAKARHGKI 470
++A K+
Sbjct: 122 VRRATPTRRKL 132
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 34.3 bits (75), Expect = 0.086
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVD 437
+++L F AYG + S+ + T N S+GF F+ + ES +K AA E + + ++
Sbjct: 64 EQDLAAMFFAYGRVLSVEIVT--NDRGSKGFGFVTLDSIESCEKARAALHESHVQGRIIE 121
Query: 438 PKKAKARHGKI 470
++A K+
Sbjct: 122 VRRATPTRRKL 132
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
T+K+L D F YG+I + V T+ +G AFI F E+ ++ A E + N +
Sbjct: 251 TEKDLNDFFYQYGDIRCLRVLTE------KGCAFIEFTTREAAER---AAERSFNKTFIK 301
Query: 438 PKKAKARHGK 467
K+ R G+
Sbjct: 302 GKRLTIRWGE 311
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 368
TT +LR F YG+I +++ D + +S+GF F+ F
Sbjct: 30 TTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRF 67
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 368
TT +LR F YG+I +++ D + +S+GF F+ F
Sbjct: 30 TTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRF 67
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 401
T+K L F +G++ +I++ D +G+ RGF F+ F E D MA
Sbjct: 23 TEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAE--DAAMA 68
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFE-SEPVVNDLLKTPKRTKGGKEVDVKRATP 694
F FG ++ + +P D + +GF F+ F+ +E + + GK + V A P
Sbjct: 31 FIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFARP 89
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLK 640
I FSEFG +L V + D+ KG +TFE + N L+
Sbjct: 335 IAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFERDSAFNRALE 378
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLK 640
I FSEFG +L V + D+ KG +TFE + N L+
Sbjct: 335 IAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFERDSAFNRALE 378
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLK 640
I FSEFG +L V + D+ KG +TFE + N L+
Sbjct: 121 IAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFERDSAFNRALE 164
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLK 640
I FSEFG +L V + D+ KG +TFE + N L+
Sbjct: 335 IAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFERDSAFNRALE 378
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 392
TTD++L F +G+I + + D +G S +AFI F +S ++
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQ 297
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 392
TTD++L F +G+I + + D +G S +AFI F +S ++
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQ 297
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 392
TTD++L F +G+I + + D +G S +AFI F +S ++
Sbjct: 183 TTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQ 228
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 613
+R S++G I + DK N KG+ F+ FES
Sbjct: 123 LREMCSKYGNIASTKAIMDKATNNCKGYGFVDFES 157
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 613
+R S++G I + DK N KG+ F+ FES
Sbjct: 97 LREMCSKYGNIASTKAIMDKATNNCKGYGFVDFES 131
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 282 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKAR 458
F G+I + + DP +G SRG+AF+ + E + H I+ K
Sbjct: 220 FEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVNVSIA 279
Query: 459 HGKIFVGGL 485
+ ++F+G +
Sbjct: 280 NTRLFIGNI 288
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAAGEHTINNKKV 434
+KE+ D F YG I+ +++K +GR FAF+ F+ ++ D V A + + +++
Sbjct: 22 EKEVEDIFHKYGRIKYVDIK----SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRI 76
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAAGEHTINNKKV 434
+KE+ D F YG I+ +++K +GR FAF+ F+ ++ D V A + + +++
Sbjct: 22 EKEVEDIFHKYGRIKYVDIK----SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRI 76
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 413
T +E+ + FG +G + I V NT +RG AF+V+ E I A EH
Sbjct: 31 TTEEMYEIFGKFGAVRQIRVG---NTAETRGTAFVVY---EDIFDAKTACEH 76
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +3
Query: 213 EDAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 392
E+ + FC +D+ L F Y + V + T +S+G+ F+ F+ E +
Sbjct: 200 ENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVR 259
Query: 393 VMAAGE-HTINNKKVDPKKAKARHGKIFV 476
M + + N+ + +K+ + I V
Sbjct: 260 AMREMDGKYVGNRPIKLRKSAWKERNIDV 288
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 401
L+ F +GE+ V D T +S+G+ F+ F ++ + +A
Sbjct: 151 LKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIA 194
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
TTD +LRD F YG+I + + +++ +AF+ ++ E K +
Sbjct: 248 TTDADLRDLFSTYGDIAEVRI------FKTQRYAFVRYEKKECATKAI 289
>L07144-4|AAK21440.2| 187|Caenorhabditis elegans Hypothetical
protein R05D3.8 protein.
Length = 187
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
T KEL+ +FGAYG+I + +D + G F I F S+D ++
Sbjct: 44 TSKELKMNFGAYGKITDVEFVSD-SEGPLH-FCIITFADSRSVDVLL 88
>Z19154-9|CAA79552.2| 559|Caenorhabditis elegans Hypothetical
protein C40H1.1 protein.
Length = 559
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +3
Query: 285 GAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG----EHTINNKKVDPK 443
G YG++ + + DP +G A + F ++ + ++ H NNK+V+ K
Sbjct: 387 GHYGKVSYVGIDIDPELKYPKGAARVTFSTSQAFVRAISGRFVQVNHAENNKRVEIK 443
>L07144-9|AAK21441.1| 737|Caenorhabditis elegans Hypothetical
protein R05D3.2 protein.
Length = 737
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 657 FVLLGVLSKSFTTGSDSNVMKQKPFLWFFVLSKGISTSKI 538
+ L+G L S+ ++ PF +FF+ S+G STSKI
Sbjct: 154 YSLIGALWNYVFVLSNVSLFVLLPFSYFFIESQGFSTSKI 193
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
+R+ F +FG I E + DK KG F+T+
Sbjct: 45 LRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTY 77
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
+R+ F +FG I E + DK KG F+T+
Sbjct: 45 LRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTY 77
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 27.9 bits (59), Expect = 7.4
Identities = 8/35 (22%), Positives = 21/35 (60%)
Frame = +2
Query: 518 FFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPV 622
+F +FG +L + + ++ KG+ ++ F+++ V
Sbjct: 51 YFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAV 85
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/48 (22%), Positives = 29/48 (60%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 401
T+ ++++ ++G +++ ++ D + G S+G+AF + P D+ +A
Sbjct: 303 TEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPTLTDQAIA 349
>U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclase
protein 12 protein.
Length = 1280
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -2
Query: 688 CTLHIDLLSTFCSFGSLKQIIYNWLRFKCDETEALSLVLCFVKGHLHF*DS 536
C + ++ +CS GSL I+ N K D S V VKG ++ DS
Sbjct: 735 CQYSVTVVREYCSKGSLHDILRN-ENLKLDHMYVASFVDDLVKGMVYIHDS 784
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/48 (22%), Positives = 29/48 (60%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 401
T+ ++++ ++G +++ ++ D + G S+G+AF + P D+ +A
Sbjct: 303 TEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPTLTDQAIA 349
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/48 (22%), Positives = 29/48 (60%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 401
T+ ++++ ++G +++ ++ D + G S+G+AF + P D+ +A
Sbjct: 278 TEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPTLTDQAIA 324
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/48 (22%), Positives = 29/48 (60%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 401
T+ ++++ ++G +++ ++ D + G S+G+AF + P D+ +A
Sbjct: 281 TEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPTLTDQAIA 327
>AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp
associated factor homologprotein 1 protein.
Length = 767
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 342 SRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 461
SRGF IVF A ++++V G H +N+ K K K H
Sbjct: 487 SRGFVEIVFCAITAMEQVKGYGTHLMNHCKDYMIKNKIYH 526
>Z68879-10|CAA93082.2| 473|Caenorhabditis elegans Hypothetical
protein K08F4.2 protein.
Length = 473
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESI----NVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
+ E++ F YGEIE + V PN FAFI + + + A
Sbjct: 346 ESEIKQVFYKYGEIEEVRMPRKVLDSPNDTSKHAFAFITMRNKAGVKAIFEA 397
>AF099920-4|AAK29844.2| 363|Caenorhabditis elegans Serpentine
receptor, class w protein95 protein.
Length = 363
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 136 CESPPPFSAFPLSWLSVVIS 77
CE P P S F + W++VVI+
Sbjct: 107 CEPPAPLSFFYMYWINVVIN 126
>AF067619-1|AAC17568.2| 368|Caenorhabditis elegans Hypothetical
protein K03E5.3 protein.
Length = 368
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 319 RQIQTQADHEGLPSLCLR 372
+ I+T D EG+PS CLR
Sbjct: 74 KMIRTDRDEEGIPSTCLR 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,819,700
Number of Sequences: 27780
Number of extensions: 311284
Number of successful extensions: 1093
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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