Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20580
(701 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 64 1e-10
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 60 2e-09
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 58 4e-09
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 58 4e-09
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 58 7e-09
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 57 1e-08
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 56 2e-08
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 56 2e-08
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 56 2e-08
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 56 2e-08
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 56 2e-08
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 55 5e-08
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 55 5e-08
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 55 5e-08
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 54 7e-08
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 52 4e-07
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 50 1e-06
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 50 2e-06
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 50 2e-06
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 49 3e-06
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 49 3e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 48 5e-06
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 48 6e-06
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 48 6e-06
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 46 2e-05
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 46 2e-05
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 46 3e-05
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 46 3e-05
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 45 4e-05
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 45 6e-05
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 44 7e-05
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 44 7e-05
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 44 7e-05
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 44 1e-04
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 44 1e-04
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 44 1e-04
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 44 1e-04
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 44 1e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 44 1e-04
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 42 3e-04
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 42 3e-04
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 42 3e-04
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 42 3e-04
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 42 3e-04
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 42 4e-04
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 42 5e-04
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 41 7e-04
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 41 7e-04
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 41 7e-04
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 41 7e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 41 7e-04
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 41 7e-04
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 41 7e-04
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 41 0.001
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 40 0.001
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 40 0.001
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 40 0.001
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 40 0.001
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 40 0.001
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 40 0.001
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 40 0.001
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 40 0.001
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 40 0.001
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 40 0.002
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 40 0.002
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 40 0.002
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 40 0.002
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 40 0.002
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 39 0.003
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 39 0.003
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 39 0.004
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 39 0.004
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 39 0.004
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 39 0.004
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 39 0.004
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 39 0.004
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 39 0.004
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 38 0.005
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 38 0.005
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 38 0.005
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 38 0.005
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 38 0.006
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 38 0.006
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 38 0.006
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 38 0.006
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 38 0.006
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 38 0.009
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 38 0.009
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 38 0.009
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 38 0.009
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 38 0.009
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 38 0.009
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 37 0.011
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 37 0.011
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 37 0.015
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 37 0.015
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 37 0.015
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 36 0.020
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 36 0.020
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 36 0.026
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 36 0.026
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 36 0.034
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 35 0.045
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 35 0.045
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 35 0.060
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 34 0.079
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 34 0.079
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 34 0.10
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 34 0.10
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 34 0.10
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 34 0.10
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 34 0.10
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 34 0.10
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 34 0.10
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 34 0.10
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 34 0.10
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 34 0.10
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 34 0.10
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 34 0.10
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 33 0.14
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 33 0.14
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 33 0.14
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 33 0.14
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 33 0.24
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 33 0.24
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 33 0.24
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 33 0.24
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 33 0.24
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 33 0.24
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 33 0.24
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 32 0.32
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 32 0.32
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 32 0.32
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 32 0.32
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 32 0.32
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 32 0.42
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 32 0.42
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 32 0.42
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 32 0.42
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 31 0.56
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 31 0.56
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 31 0.56
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 31 0.74
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 31 0.74
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 31 0.74
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 31 0.74
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 31 0.74
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 31 0.98
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 31 0.98
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 31 0.98
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 30 1.3
At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing ... 30 1.3
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 30 1.3
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 30 1.3
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 30 1.7
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 30 1.7
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 29 2.3
At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing ... 29 2.3
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 2.3
At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 compone... 29 3.0
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 29 3.0
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 29 3.0
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 29 3.0
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 29 3.0
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 29 3.0
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 29 3.9
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 28 5.2
At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing ... 28 5.2
At5g03480.1 68418.m00304 expressed protein ; expression support... 28 5.2
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 28 5.2
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 28 5.2
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 28 6.9
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 28 6.9
At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing ... 28 6.9
At5g51300.2 68418.m06360 splicing factor-related contains simila... 27 9.1
At5g51300.1 68418.m06359 splicing factor-related contains simila... 27 9.1
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 27 9.1
At2g47390.1 68415.m05915 expressed protein 27 9.1
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 27 9.1
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 27 9.1
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 27 9.1
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ... 27 9.1
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 27 9.1
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/81 (38%), Positives = 47/81 (58%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 395
D K F T + +LR+HF YGE+ V D TGR RGF F++F P +D+V
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63
Query: 396 MAAGEHTINNKKVDPKKAKAR 458
+ +H+I+ ++VD K+A +R
Sbjct: 64 LQE-KHSIDTREVDVKRAMSR 83
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/75 (32%), Positives = 41/75 (54%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
TD+E R +F YG + + + D T R RGF F+ F + +++D V+ H ++ K+V+
Sbjct: 122 TDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVE 181
Query: 438 PKKAKARHGKIFVGG 482
K+A + GG
Sbjct: 182 VKRALPKDANPGGGG 196
Score = 54.8 bits (126), Expect = 5e-08
Identities = 23/62 (37%), Positives = 39/62 (62%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRAT 691
R +F +G + +V + +D+ N+ +GF F++F+SE V+ +L GK+V+VKRA
Sbjct: 127 RQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRAL 186
Query: 692 PK 697
PK
Sbjct: 187 PK 188
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R F+ +G + + + DK + +GF F+ F S+P V D + K + +EVDVKRA
Sbjct: 22 LREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIF-SDPSVLDRVLQEKHSIDTREVDVKRA 80
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/81 (37%), Positives = 45/81 (55%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 395
D K F T + LR++F +GE+ + V + TGR RGF F+ F P ID+V
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV 63
Query: 396 MAAGEHTINNKKVDPKKAKAR 458
+ +H I+N+ VD K+A +R
Sbjct: 64 L-QDKHHIDNRDVDVKRAMSR 83
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/64 (35%), Positives = 35/64 (54%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
T E R +F YG + + D T R RGF F+ F + +S+D V+ H +N K+V+
Sbjct: 122 TSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVE 181
Query: 438 PKKA 449
K+A
Sbjct: 182 VKRA 185
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRAT 691
R +F +G + + + D+T + +GF F++F+SE V+ +L GK+V+VKRA
Sbjct: 127 RAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRAL 186
Query: 692 PK 697
PK
Sbjct: 187 PK 188
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R +FS FG +L+V + +K + +GF F+ F S+P V D + K ++VDVKRA
Sbjct: 22 LREYFSNFGEVLQVTVMREKATGRPRGFGFVAF-SDPAVIDRVLQDKHHIDNRDVDVKRA 80
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 58.4 bits (135), Expect = 4e-09
Identities = 38/98 (38%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Frame = +3
Query: 225 KTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
K F TT+ HFG YGEI + D +TG+ RGF FI F P +DKV+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI-E 78
Query: 405 GEHTINNKKVDPKKA--KARHG---------KIFVGGL 485
H IN K+V+ K+ K G KIFVGG+
Sbjct: 79 DTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGI 116
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG------EHTI 419
T+ EL+D F YG + V D T RSRGF F++F + E +D++++ G + +
Sbjct: 121 TEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQV 180
Query: 420 NNKKVDPKKAKAR 458
KK +PKK+ R
Sbjct: 181 EIKKAEPKKSLNR 193
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/64 (34%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLL-KTPKRTKGGKEVDVKR 685
+++FF+++G ++E ++ D N+ +GF F+ F+SE VV++LL K +V++K+
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKK 184
Query: 686 ATPK 697
A PK
Sbjct: 185 AEPK 188
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRATPK 697
F ++G I + + D+ Q +GF FITF ++P V D + GK+V++KR PK
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITF-ADPSVVDKVIEDTHVINGKQVEIKRTIPK 96
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 58.4 bits (135), Expect = 4e-09
Identities = 38/98 (38%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Frame = +3
Query: 225 KTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
K F TT+ HFG YGEI + D +TG+ RGF FI F P +DKV+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI-E 78
Query: 405 GEHTINNKKVDPKKA--KARHG---------KIFVGGL 485
H IN K+V+ K+ K G KIFVGG+
Sbjct: 79 DTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGI 116
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 407
T+ EL+D F YG + V D T RSRGF F++F + E +D++++ G
Sbjct: 121 TEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/43 (37%), Positives = 32/43 (74%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLL 637
+++FF+++G ++E ++ D N+ +GF F+ F+SE VV++LL
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRATPK 697
F ++G I + + D+ Q +GF FITF ++P V D + GK+V++KR PK
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITF-ADPSVVDKVIEDTHVINGKQVEIKRTIPK 96
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/67 (35%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 437
+ EL+++F YG+I + D +TGRSRGF F+ F+ +S+D++ + G+ H + +K+V+
Sbjct: 170 EDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVE 229
Query: 438 PKKAKAR 458
K+A+ +
Sbjct: 230 IKRAEPK 236
Score = 51.2 bits (117), Expect = 6e-07
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Frame = +3
Query: 225 KTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
K F TT + ++FG +GE+ + TD TG RGF F+ F +KV+
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 405 GEHTINNKKVDPK------------KAKARHGKIFVGGL 485
+H I+++KVD K KA ++ KIFVGGL
Sbjct: 127 -DHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGL 164
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPK-RTKGGKEVDVKR 685
++N+F +G I+E ++ +D + +GF F+TF++E V+ L K G K+V++KR
Sbjct: 173 LKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKR 232
Query: 686 ATPK 697
A PK
Sbjct: 233 AEPK 236
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 515 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRATP 694
N+F +FG +++ + D+ +GF F+TF V +L+ ++VD+KR P
Sbjct: 84 NYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE-EDHVIDDRKVDLKRTLP 142
Query: 695 K 697
+
Sbjct: 143 R 143
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 57.2 bits (132), Expect = 1e-08
Identities = 29/81 (35%), Positives = 45/81 (55%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 395
D K F T ++ L+++FG YG++ + D TGR+RGF FIVF P ++V
Sbjct: 13 DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 72
Query: 396 MAAGEHTINNKKVDPKKAKAR 458
+ +H I+ + V+ KKA R
Sbjct: 73 I-MDKHIIDGRTVEAKKAVPR 92
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRAT 691
+N+F +FGTI +V + +D + +GF FITF+SE V+ +L GK V+VKRA
Sbjct: 139 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAV 198
Query: 692 PK 697
PK
Sbjct: 199 PK 200
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/64 (40%), Positives = 38/64 (59%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
T+ E +++F +G I + V D NT R RGF FI F + ES+D V+ H +N K V+
Sbjct: 134 TEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVE 193
Query: 438 PKKA 449
K+A
Sbjct: 194 VKRA 197
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/63 (28%), Positives = 37/63 (58%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
++ +F ++G ++E + D+T + +GF FI F ++P V + + K G+ V+ K+A
Sbjct: 31 LQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF-ADPSVAERVIMDKHIIDGRTVEAKKA 89
Query: 689 TPK 697
P+
Sbjct: 90 VPR 92
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/62 (41%), Positives = 39/62 (62%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRAT 691
+N+F +FGTI +V + +D + +GF FITF+S+ V+ +L GK V+VKRA
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 692 PK 697
PK
Sbjct: 187 PK 188
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/64 (37%), Positives = 40/64 (62%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
T++E +++F +G I + V D NT R RGF FI F + +++D+V+ H +N K V+
Sbjct: 122 TEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVE 181
Query: 438 PKKA 449
K+A
Sbjct: 182 VKRA 185
Score = 55.2 bits (127), Expect = 4e-08
Identities = 30/81 (37%), Positives = 44/81 (54%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 395
D K F T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
Query: 396 MAAGEHTINNKKVDPKKAKAR 458
+ +H I+ + V+ KKA R
Sbjct: 64 I-MDKHIIDGRTVEAKKAVPR 83
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/63 (30%), Positives = 38/63 (60%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R++FS +G ++E + D+ + +GF FI F ++P V++ + K G+ V+ K+A
Sbjct: 22 LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-ADPCVSERVIMDKHIIDGRTVEAKKA 80
Query: 689 TPK 697
P+
Sbjct: 81 VPR 83
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/62 (41%), Positives = 39/62 (62%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRAT 691
+N+F +FGTI +V + +D + +GF FITF+S+ V+ +L GK V+VKRA
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 692 PK 697
PK
Sbjct: 187 PK 188
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/64 (37%), Positives = 40/64 (62%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
T++E +++F +G I + V D NT R RGF FI F + +++D+V+ H +N K V+
Sbjct: 122 TEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVE 181
Query: 438 PKKA 449
K+A
Sbjct: 182 VKRA 185
Score = 55.2 bits (127), Expect = 4e-08
Identities = 30/81 (37%), Positives = 44/81 (54%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 395
D K F T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
Query: 396 MAAGEHTINNKKVDPKKAKAR 458
+ +H I+ + V+ KKA R
Sbjct: 64 I-MDKHIIDGRTVEAKKAVPR 83
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/63 (30%), Positives = 38/63 (60%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R++FS +G ++E + D+ + +GF FI F ++P V++ + K G+ V+ K+A
Sbjct: 22 LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-ADPCVSERVIMDKHIIDGRTVEAKKA 80
Query: 689 TPK 697
P+
Sbjct: 81 VPR 83
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/62 (41%), Positives = 39/62 (62%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRAT 691
+N+F +FGTI +V + +D + +GF FITF+S+ V+ +L GK V+VKRA
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAV 186
Query: 692 PK 697
PK
Sbjct: 187 PK 188
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/64 (37%), Positives = 40/64 (62%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
T++E +++F +G I + V D NT R RGF FI F + +++D+V+ H +N K V+
Sbjct: 122 TEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVE 181
Query: 438 PKKA 449
K+A
Sbjct: 182 VKRA 185
Score = 55.2 bits (127), Expect = 4e-08
Identities = 30/81 (37%), Positives = 44/81 (54%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 395
D K F T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
Query: 396 MAAGEHTINNKKVDPKKAKAR 458
+ +H I+ + V+ KKA R
Sbjct: 64 I-MDKHIIDGRTVEAKKAVPR 83
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/63 (30%), Positives = 38/63 (60%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R++FS +G ++E + D+ + +GF FI F ++P V++ + K G+ V+ K+A
Sbjct: 22 LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-ADPCVSERVIMDKHIIDGRTVEAKKA 80
Query: 689 TPK 697
P+
Sbjct: 81 VPR 83
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/81 (35%), Positives = 46/81 (56%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 395
++ K F T++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 396 MAAGEHTINNKKVDPKKAKAR 458
+ +H I+ K V+ KKA R
Sbjct: 64 VLL-KHIIDGKIVEAKKAVPR 83
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/78 (33%), Positives = 40/78 (51%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 395
++ K F T+ E + +F +G I + V D T R RGF FI + + E++DKV
Sbjct: 104 NSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKV 163
Query: 396 MAAGEHTINNKKVDPKKA 449
+ H +N K V+ K A
Sbjct: 164 LQKTFHELNGKMVEVKLA 181
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/62 (35%), Positives = 38/62 (61%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRAT 691
+ +F++FG I +V + +D + +GF FI+++SE V+ +L+ GK V+VK A
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAV 182
Query: 692 PK 697
PK
Sbjct: 183 PK 184
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R++F FG +LE + D+ + +GF F+ F ++P V + + K GK V+ K+A
Sbjct: 22 LRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF-ADPNVAERVVLLKHIIDGKIVEAKKA 80
Query: 689 TPK 697
P+
Sbjct: 81 VPR 83
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/81 (35%), Positives = 46/81 (56%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 395
++ K F T++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 396 MAAGEHTINNKKVDPKKAKAR 458
+ +H I+ K V+ KKA R
Sbjct: 64 VLL-KHIIDGKIVEAKKAVPR 83
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/78 (33%), Positives = 40/78 (51%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 395
++ K F T+ E + +F +G I + V D T R RGF FI + + E++DKV
Sbjct: 104 NSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKV 163
Query: 396 MAAGEHTINNKKVDPKKA 449
+ H +N K V+ K A
Sbjct: 164 LQKTFHELNGKMVEVKLA 181
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/62 (35%), Positives = 38/62 (61%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRAT 691
+ +F++FG I +V + +D + +GF FI+++SE V+ +L+ GK V+VK A
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAV 182
Query: 692 PK 697
PK
Sbjct: 183 PK 184
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R++F FG +LE + D+ + +GF F+ F ++P V + + K GK V+ K+A
Sbjct: 22 LRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF-ADPNVAERVVLLKHIIDGKIVEAKKA 80
Query: 689 TPK 697
P+
Sbjct: 81 VPR 83
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 54.8 bits (126), Expect = 5e-08
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Frame = +3
Query: 129 DSQDHNSAAAPGRDDDRCEXXXXXXXXXEDAMKTFCWWAELGTTDKELRDHFGAYGEIES 308
+ + H+ + +DD + + A K F TT E HFG YGEI
Sbjct: 11 EDEIHDPKPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITD 70
Query: 309 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG-------- 464
+ D TG+ RGF F+ + +DKV+ H I K+V+ K+ R
Sbjct: 71 SVIMKDRKTGQPRGFGFVTYADSSVVDKVI-QDNHIIIGKQVEIKRTIPRGSMSSNDFKT 129
Query: 465 -KIFVGGL 485
KIFVGG+
Sbjct: 130 KKIFVGGI 137
Score = 50.8 bits (116), Expect = 9e-07
Identities = 21/67 (31%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVD 437
D E ++ F +GE++ + D +TGRSRGF F+ +++ + +D ++A G ++ +V+
Sbjct: 143 DDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVE 202
Query: 438 PKKAKAR 458
KKA+ +
Sbjct: 203 IKKAEPK 209
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTK-GGKEVDVKRA 688
+ FF +FG + E ++ D + + +GF F+T+ESE +V+ LL R + G +V++K+A
Sbjct: 147 KEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKA 206
Query: 689 TPK 697
PK
Sbjct: 207 EPK 209
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/59 (28%), Positives = 33/59 (55%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRATPK 697
F ++G I + + D+ Q +GF F+T+ VV+ +++ GK+V++KR P+
Sbjct: 62 FGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ-DNHIIIGKQVEIKRTIPR 119
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/81 (32%), Positives = 46/81 (56%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 395
D K F T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++ ++
Sbjct: 4 DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEI 62
Query: 396 MAAGEHTINNKKVDPKKAKAR 458
+ +H I+ + V+ KKA R
Sbjct: 63 VITEKHNIDGRLVEAKKAVPR 83
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/62 (38%), Positives = 36/62 (58%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRAT 691
+ +F +FGT +V + +D + +GF FIT++SE V +L GK V+VKRA
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAV 184
Query: 692 PK 697
PK
Sbjct: 185 PK 186
Score = 47.6 bits (108), Expect = 8e-06
Identities = 20/63 (31%), Positives = 39/63 (61%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
++ +FS FG ++E + D+T + +GF F+ F ++P V +++ T K G+ V+ K+A
Sbjct: 22 LKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIVITEKHNIDGRLVEAKKA 80
Query: 689 TPK 697
P+
Sbjct: 81 VPR 83
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/81 (32%), Positives = 46/81 (56%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 395
D K F T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++ ++
Sbjct: 4 DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEI 62
Query: 396 MAAGEHTINNKKVDPKKAKAR 458
+ +H I+ + V+ KKA R
Sbjct: 63 VITEKHNIDGRLVEAKKAVPR 83
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/62 (38%), Positives = 36/62 (58%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRAT 691
+ +F +FGT +V + +D + +GF FIT++SE V +L GK V+VKRA
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAV 184
Query: 692 PK 697
PK
Sbjct: 185 PK 186
Score = 47.6 bits (108), Expect = 8e-06
Identities = 20/63 (31%), Positives = 39/63 (61%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
++ +FS FG ++E + D+T + +GF F+ F ++P V +++ T K G+ V+ K+A
Sbjct: 22 LKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIVITEKHNIDGRLVEAKKA 80
Query: 689 TPK 697
P+
Sbjct: 81 VPR 83
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 54.4 bits (125), Expect = 7e-08
Identities = 24/80 (30%), Positives = 44/80 (55%)
Frame = +3
Query: 225 KTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
K F TT++E + +F +G + V D T R RGF F+ + + +S++ VM +
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 405 GEHTINNKKVDPKKAKARHG 464
H +++K+V+ K+A + G
Sbjct: 181 NFHELSDKRVEVKRAIPKEG 200
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRAT 691
+++F FG +V + D N+ +GF F+T++SE V ++++ K V+VKRA
Sbjct: 137 KSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAI 196
Query: 692 PK 697
PK
Sbjct: 197 PK 198
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/82 (30%), Positives = 38/82 (46%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 395
D K F T+++ L+ +F YG + V + TG+ RGF F+ F + K
Sbjct: 4 DRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA 63
Query: 396 MAAGEHTINNKKVDPKKAKARH 461
+ H I K VD +KA +H
Sbjct: 64 L-RDTHFILGKPVDVRKAIRKH 84
Score = 35.9 bits (79), Expect = 0.026
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKG--GKEVDVK 682
++ +FS +G +LE + +K + +GF F+ F ++ D++K + T GK VDV+
Sbjct: 22 LKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAND---CDVVKALRDTHFILGKPVDVR 78
Query: 683 RATPK 697
+A K
Sbjct: 79 KAIRK 83
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/78 (33%), Positives = 40/78 (51%)
Frame = +3
Query: 216 DAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 395
++ K F T+ E + +F +G I + V D T R RGF FI + + E++DKV
Sbjct: 31 NSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKV 90
Query: 396 MAAGEHTINNKKVDPKKA 449
+ H +N K V+ K A
Sbjct: 91 LQKTFHELNGKMVEVKLA 108
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/62 (35%), Positives = 38/62 (61%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRAT 691
+ +F++FG I +V + +D + +GF FI+++SE V+ +L+ GK V+VK A
Sbjct: 50 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAV 109
Query: 692 PK 697
PK
Sbjct: 110 PK 111
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T + LR HF YGEI V D NTGRS+G+ F+ F+ PE+ + A I+ ++
Sbjct: 35 TQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRA 94
Query: 435 D 437
+
Sbjct: 95 N 95
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R F ++G ILE + DK + KG+ F+TF P G+ + A
Sbjct: 40 LRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLA 99
Query: 689 T---PKP 700
+ P+P
Sbjct: 100 SLGRPRP 106
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/100 (27%), Positives = 44/100 (44%)
Frame = +3
Query: 99 LNGNAENGGGDSQDHNSAAAPGRDDDRCEXXXXXXXXXEDAMKTFCWWAELGTTDKELRD 278
++G+ E GG D A D + D + F T++EL +
Sbjct: 220 IDGDVEAGGVGKDDDGDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELME 279
Query: 279 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
HF +G+I +++ D T RSRG A+I++ PE + M
Sbjct: 280 HFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAM 319
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 368
T +ELR F +G+I+S+ + N G+ G+AF+ F
Sbjct: 681 TKRELRQLFSPFGQIKSMRL-PKKNIGQYAGYAFVEF 716
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/71 (33%), Positives = 39/71 (54%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
TT + L+ F +YGEIE +V D +TGR +G+ F++FK + + + E + N+ V
Sbjct: 419 TTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIV 478
Query: 435 DPKKAKARHGK 467
A + GK
Sbjct: 479 VCNLASEKPGK 489
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/43 (48%), Positives = 28/43 (65%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 383
T + LR HF YG+I V TD NTGRS+G+ F+ F+ PE+
Sbjct: 35 TQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R F ++G ILE + DK + KG+ F+TF P G+ + A
Sbjct: 40 LRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLA 99
Query: 689 T 691
+
Sbjct: 100 S 100
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI-NNKKV 434
T+++L DHF G++ +++ DP T SRGF FI K+ ++ + + +H++ + +
Sbjct: 87 TERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVI 146
Query: 435 DPKKAKARHGK 467
+KA+ R G+
Sbjct: 147 TVEKARRRRGR 157
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKK 431
T+D+ LRD F YG + V D +GRSRGF FI F +++D+ +AA ++ +
Sbjct: 18 TSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRT 77
Query: 432 VDPKKAKARHG 464
+ KA+ G
Sbjct: 78 ITVDKAQPHQG 88
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPK-RTKGGKEVDVKR 685
+R+ F ++G ++E ++ DK + +GF FITF+ + +++ + G+ + V +
Sbjct: 23 LRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDK 82
Query: 686 ATP 694
A P
Sbjct: 83 AQP 85
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 48.0 bits (109), Expect = 6e-06
Identities = 26/62 (41%), Positives = 33/62 (53%)
Frame = +2
Query: 512 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRAT 691
R+ F +G I ++ MP D Q +G FITF S V DL++ GG V V RAT
Sbjct: 108 RSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME-DTHDLGGTTVAVDRAT 166
Query: 692 PK 697
PK
Sbjct: 167 PK 168
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 449
L+D+ +G++E V D +TGRSRGF ++ F + E + GEH + N+ ++ K A
Sbjct: 19 LKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-KGEHFLGNRILEVKVA 77
Score = 41.1 bits (92), Expect = 7e-04
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
++ + R HF YGEI + + D N+ + RG FI F + +S++ +M
Sbjct: 103 SESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLM 149
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +3
Query: 267 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
+LRD+FG +G I+ + DP RGF F+ F D+V A H I ++V
Sbjct: 255 DLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRV-ARRSHEICGQEV 309
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R++F FG I + +P D ++ +GF F+TF +E V D + G+EV + A
Sbjct: 256 LRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF-AENGVADRVARRSHEICGQEVAIDSA 314
Query: 689 TP 694
TP
Sbjct: 315 TP 316
Score = 35.9 bits (79), Expect = 0.026
Identities = 18/63 (28%), Positives = 37/63 (58%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
++++ S+FG + + + D++ + +GF ++TF S + LK + G + ++VK A
Sbjct: 19 LKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK-GEHFLGNRILEVKVA 77
Query: 689 TPK 697
TPK
Sbjct: 78 TPK 80
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/78 (30%), Positives = 35/78 (44%)
Frame = +3
Query: 225 KTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
K F T + LR+ F YGE+ + D TGRSRGFAF+ F + E M
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 405 GEHTINNKKVDPKKAKAR 458
++ +++ A R
Sbjct: 95 DGQDLHGRRIRVNYATER 112
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/63 (23%), Positives = 35/63 (55%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R FS++G +++ ++ D+ + +GF F+TF S ++ ++ + G+ + V A
Sbjct: 50 LREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYA 109
Query: 689 TPK 697
T +
Sbjct: 110 TER 112
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/61 (32%), Positives = 35/61 (57%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A I+ +K
Sbjct: 28 TPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKA 87
Query: 435 D 437
+
Sbjct: 88 N 88
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R +F +FG ILE + DK + KG+ F+TF + P G++ + A
Sbjct: 33 MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKANCNIA 92
Query: 689 T---PKP 700
+ P+P
Sbjct: 93 SFGRPRP 99
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/61 (32%), Positives = 35/61 (57%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A I+ +K
Sbjct: 28 TPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKA 87
Query: 435 D 437
+
Sbjct: 88 N 88
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R +F +FG ILE + DK + KG+ F+TF + P G++ + A
Sbjct: 33 MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKANCNIA 92
Query: 689 T---PKP 700
+ P+P
Sbjct: 93 SFGRPRP 99
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/64 (42%), Positives = 35/64 (54%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
TTD EL+ FG YG I S V D G+SR F F+ F+ PE + + A +N KK
Sbjct: 236 TTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEA----LNGKKF 290
Query: 435 DPKK 446
D K+
Sbjct: 291 DDKE 294
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
TD++LR+ F +G I S V DP +G S+G F+ F A +V+
Sbjct: 340 TDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVL 385
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +3
Query: 225 KTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
K F GT D L+ F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 34.7 bits (76), Expect = 0.060
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLK-TPKRTKGGKEVDVKR 685
++ F+ FG + E + D+ + +GF F++F E N+ +K + G+++ V
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNL 110
Query: 686 ATPK 697
AT +
Sbjct: 111 ATER 114
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +3
Query: 225 KTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
K F GT D L+ F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 34.7 bits (76), Expect = 0.060
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLK-TPKRTKGGKEVDVKR 685
++ F+ FG + E + D+ + +GF F++F E N+ +K + G+++ V
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNL 110
Query: 686 ATPK 697
AT +
Sbjct: 111 ATER 114
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 401
TT+++L+D F ++G++ V TD ++GRS+GF F+ + E +K A
Sbjct: 45 TTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
+++ F+ FG +++ + D+ + KGF F+T+
Sbjct: 50 LQDAFASFGQLVDARVITDRDSGRSKGFGFVTY 82
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
TT + L+ F YGEI +V D +TGR++GF F++FK + + E + N+ V
Sbjct: 174 TTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTV 233
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRATP 694
F +G I E + DK + KGF F+ F++ LK P++ + V A P
Sbjct: 183 FEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTVSCLPARP 240
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +3
Query: 264 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 362
KELR HF GE+ ++V TD TG SRGFA+I
Sbjct: 497 KELRSHFSKCGEVTRVHVPTDRETGASRGFAYI 529
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/60 (38%), Positives = 33/60 (55%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 449
L +HF AYG++E + D TG+SRGFA V+K E +A I+ K ++ K A
Sbjct: 183 LLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 368
TT + LR F +YG++E V D TG+S+G+ F+ F
Sbjct: 86 TTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGK 667
+R+ FS +G + E + DK + KG+ F+TF LK P + G+
Sbjct: 91 LRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGR 143
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 515 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
N F +G + E + FDK + +GF +++ L P + GK ++ K A
Sbjct: 185 NHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/60 (38%), Positives = 33/60 (55%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 449
L +HF AYG++E + D TG+SRGFA V+K E +A I+ K ++ K A
Sbjct: 183 LLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 368
TT + LR F +YG++E V D TG+S+G+ F+ F
Sbjct: 86 TTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGK 667
+R+ FS +G + E + DK + KG+ F+TF LK P + G+
Sbjct: 91 LRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGR 143
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 515 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
N F +G + E + FDK + +GF +++ L P + GK ++ K A
Sbjct: 185 NHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/48 (43%), Positives = 25/48 (52%)
Frame = +3
Query: 225 KTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 368
K F GT D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLL-KTPKRTKGGKEVDVKR 685
+R+ F+ FG +++ ++ D+ + +GF F+ F E + + + G+ + V
Sbjct: 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110
Query: 686 ATPKP 700
A +P
Sbjct: 111 ANDRP 115
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/48 (43%), Positives = 25/48 (52%)
Frame = +3
Query: 225 KTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 368
K F GT D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLL-KTPKRTKGGKEVDVKR 685
+R+ F+ FG +++ ++ D+ + +GF F+ F E + + + G+ + V
Sbjct: 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110
Query: 686 ATPKP 700
A +P
Sbjct: 111 ANDRP 115
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKK 431
T D+ L F YG++ + D TGRSRGF F+ FK +++ D + ++ +
Sbjct: 19 TDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRS 78
Query: 432 VDPKKAKAR 458
+ +A++R
Sbjct: 79 ITVNEAQSR 87
Score = 31.9 bits (69), Expect = 0.42
Identities = 10/40 (25%), Positives = 26/40 (65%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLK 640
F+++G +++ ++ D+ + +GF F+TF+ E + D ++
Sbjct: 28 FAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKK 431
T D+ L F YG++ + D TGRSRGF F+ FK +++ D + ++ +
Sbjct: 19 TDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRS 78
Query: 432 VDPKKAKAR 458
+ +A++R
Sbjct: 79 ITVNEAQSR 87
Score = 31.9 bits (69), Expect = 0.42
Identities = 10/40 (25%), Positives = 26/40 (65%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLK 640
F+++G +++ ++ D+ + +GF F+TF+ E + D ++
Sbjct: 28 FAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/59 (30%), Positives = 35/59 (59%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T+++L DHF G++ +++ DP T SRGF FI K+ ++ + + +H++ +V
Sbjct: 57 TERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRV 115
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
TD +LR+HF +G I S V DP +G SRG F+ F PE + +
Sbjct: 339 TDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAI 384
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 264 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 383
K L + F A+G I S V DP +G+S+G+ F+ + E+
Sbjct: 147 KALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEA 185
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T E+R +F +GEI + TD TG+S+G+ F+ F+ +S + +A I+ +K
Sbjct: 28 TPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRKA 87
Query: 435 D 437
+
Sbjct: 88 N 88
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
+R +F +FG ILE + DK + KG+ F+TF + P G++ + A
Sbjct: 33 MRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRKANCNIA 92
Query: 689 T---PKP 700
+ P+P
Sbjct: 93 SFGRPRP 99
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
+ LR+ F YGE+ V D TGRSRGF F+ F + E+ + A
Sbjct: 53 EDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKT-PKRTKGGKEVDVKR 685
+R F+++G +++ + D+ + +GF F+TF S + ++ R G+ V V
Sbjct: 56 LREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNY 115
Query: 686 ATPK 697
A +
Sbjct: 116 ANDR 119
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T + L +F +GEI V D T RS+GF F+ F+ ES + HTI+ + V
Sbjct: 20 TRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTV 79
Query: 435 DPKKA 449
+ K A
Sbjct: 80 NCKLA 84
Score = 35.1 bits (77), Expect = 0.045
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 515 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
++F FG I+ ++ D + KGF F+TF + P T G+ V+ K A
Sbjct: 27 SYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/64 (40%), Positives = 37/64 (57%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
TTD +L++ FG YG+I S V D G+S+GF F+ F E+ D A E ++N K
Sbjct: 40 TTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNF---ENADDAARAVE-SLNGHKF 94
Query: 435 DPKK 446
D K+
Sbjct: 95 DDKE 98
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 401
+D++L++ F +G + S V DPN G S+G F+ F PE + M+
Sbjct: 144 SDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMS 190
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +3
Query: 225 KTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
K F + TT + L F YGEIE V D TG+++GF F++FK + + +
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 405 GEHTINNK 428
+ I N+
Sbjct: 165 PKKRILNR 172
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKR 652
F +G I E + DK + KGF F+ F++ + LK PK+
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKK 167
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +3
Query: 225 KTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
K F + TT + L F YGEIE V D TG+++GF F++FK + + +
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 405 GEHTINNK 428
+ I N+
Sbjct: 165 PKKRILNR 172
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKR 652
F +G I E + DK + KGF F+ F++ + LK PK+
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKK 167
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 383
+R +F +GEI V TD NTGRS+G+ F+ FK E+
Sbjct: 38 MRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 610
+R +F +FG I+E + DK + KG+ F+TF+
Sbjct: 38 MRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFK 71
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 41.5 bits (93), Expect = 5e-04
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 255 TTDKE-LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 431
TT KE L + F +GEI +NV D T RS+G+ F+ FK ES + TI +
Sbjct: 23 TTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTIEGRI 82
Query: 432 VDPKKA 449
+ K A
Sbjct: 83 TNCKLA 88
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 515 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
NFF FG I+ V + D+ ++ +G+ F+TF+ K P T G+ + K A
Sbjct: 31 NFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTIEGRITNCKLA 88
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA------GEHTI 419
TD++L F +G+I + + +TGRSRGF FI F ++D+ + G+ I
Sbjct: 19 TDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVI 78
Query: 420 NNKKVDPK 443
+ + +PK
Sbjct: 79 SVNRAEPK 86
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPK-RTKGGKEVDVKRATPK 697
FS FG IL+ ++ ++ + +GF FITF +++ ++ R G + + V RA PK
Sbjct: 27 FSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPK 86
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T D++L+ F +G++ + D +GRSRGF F+ FK +K M +N K++
Sbjct: 17 TNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKEL 72
Query: 435 D 437
D
Sbjct: 73 D 73
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVD 676
++ FS+FG +++ ++ D+ + +GF F+TF+ E + D ++ GKE+D
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE----EMNGKELD 73
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T D++L+ F +G++ + D +GRSRGF F+ FK +K M +N K++
Sbjct: 17 TNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKEL 72
Query: 435 D 437
D
Sbjct: 73 D 73
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVD 676
++ FS+FG +++ ++ D+ + +GF F+TF+ E + D ++ GKE+D
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE----EMNGKELD 73
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T D++L+ F +G++ + D +GRSRGF F+ FK +K M +N K++
Sbjct: 17 TNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKEL 72
Query: 435 D 437
D
Sbjct: 73 D 73
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVD 676
++ FS+FG +++ ++ D+ + +GF F+TF+ E + D ++ GKE+D
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE----EMNGKELD 73
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 249 LGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKV 395
+ T++ELR HF G I S + D G+S+GF F+ F P E+ID V
Sbjct: 313 VAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAV 361
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 419
T+ L+D F +G I S V T + G+SRG+ F+ F+ ++ + TI
Sbjct: 124 TNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTI 176
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
LR++F +G+I V TD ++GRS+G+ F+ F PE+ K I+ ++ +
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRAN 78
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
+RN+F +FG I+E + DK+ + KG+ F+TF
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF 55
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
LR++F +G+I V TD ++GRS+G+ F+ F PE+ K I+ ++ +
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRAN 78
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
+RN+F +FG I+E + DK+ + KG+ F+TF
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF 55
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/42 (47%), Positives = 26/42 (61%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 383
TD EL+ FG YG+I S V D +G SR F F+ F +PE+
Sbjct: 237 TDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEA 277
Score = 34.7 bits (76), Expect = 0.060
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 380
D++L++ F YG + S V + + G SRGF F+ + PE
Sbjct: 341 DEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPE 379
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESE 616
FS FGTIL ++ D + KG+ F+ FE E
Sbjct: 152 FSSFGTILSCKVAMD-VVGRSKGYGFVQFEKE 182
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGE 410
TT +L F YG++ + + D TG SRGFAF+ + KA E +D +V+ E
Sbjct: 27 TTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGRE 86
Query: 411 HTINNKKVDPKKAKARHGKI 470
T+ K P K G++
Sbjct: 87 ITVQFAKYGPNAEKISKGRV 106
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGE 410
TT +L F YG++ + + D TG SRGFAF+ + KA E +D +V+ E
Sbjct: 27 TTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGRE 86
Query: 411 HTINNKKVDPKKAKARHGKI 470
T+ K P K G++
Sbjct: 87 ITVQFAKYGPNAEKISKGRV 106
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +3
Query: 252 GTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
GT + L+D F ++ + V T+ TGRSRG+ F+ F + +S + ++A
Sbjct: 41 GTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKK 431
TTD LR+ F YG + V D T RSRGF F+ + + + ++ + +N ++
Sbjct: 14 TTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRR 73
Query: 432 VDPK 443
V K
Sbjct: 74 VSVK 77
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 613
+R FS +G +++ + D+ ++ +GF F+T+ S
Sbjct: 19 LREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSS 53
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 518 FFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRAT-- 691
FFS+FG I E + DK + KGFC ++S L+ P +T G + ++A
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDG 323
Query: 692 PKP 700
PKP
Sbjct: 324 PKP 326
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRATPKP 700
F ++G I + + FDK + KG+ FI ++S + LK P++ G + + A+ P
Sbjct: 160 FKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGP 219
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 282 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 449
F +GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 34.3 bits (75), Expect = 0.079
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 374
T + L + F YGEIE D +G+S+G+ FI++K+
Sbjct: 151 TKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 518 FFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRAT-- 691
FFS+FG I E + DK + KGFC ++S L+ P +T G + ++A
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDG 323
Query: 692 PKP 700
PKP
Sbjct: 324 PKP 326
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRATPKP 700
F ++G I + + FDK + KG+ FI ++S + LK P++ G + + A+ P
Sbjct: 160 FKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGP 219
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 282 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 449
F +GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 34.3 bits (75), Expect = 0.079
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 374
T + L + F YGEIE D +G+S+G+ FI++K+
Sbjct: 151 TKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 518 FFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRAT-- 691
FFS+FG I E + DK + KGFC ++S L+ P +T G + ++A
Sbjct: 264 FFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDG 323
Query: 692 PKP 700
PKP
Sbjct: 324 PKP 326
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRATPKP 700
F ++G I + + FDK + KG+ FI ++S + LK P++ G + + A+ P
Sbjct: 160 FKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGP 219
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 282 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 449
F +GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 34.3 bits (75), Expect = 0.079
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 374
T + L + F YGEIE D +G+S+G+ FI++K+
Sbjct: 151 TKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 401
T + L+D FG + V + NTGRSRGF FI F++ E++ +A
Sbjct: 231 TSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALA 278
Score = 34.7 bits (76), Expect = 0.060
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTK-GGKEVDV 679
+ F E GT+++V++ +DK ++ +GF F+T S + ++ ++ GG+ V V
Sbjct: 132 LSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
Score = 34.3 bits (75), Expect = 0.079
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
T EL FG G + + + D T RSRGF F+ + E + M N+ ++
Sbjct: 128 TSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM----QMFNSSQIG 183
Query: 438 PKKAKARHGKIFVGG 482
+ K ++ GG
Sbjct: 184 GRTVKVNFPEVPRGG 198
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 225 KTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 368
K F ++ L+D F ++GE+ + + D +GRSRGF F+ F
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 34.7 bits (76), Expect = 0.060
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 616
+++ FS FG + EV + +DK + +GF F+ F E
Sbjct: 57 LKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEE 92
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = +3
Query: 252 GTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 431
G ++++L+ FG GE+ + + +P T +S+G AF+ F E + + + + N K
Sbjct: 224 GASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGK 283
Query: 432 VDPKKAKARHGKIFVGGL 485
A + +FVG +
Sbjct: 284 KCGVTASQDNDTLFVGNI 301
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 440
++ +RD YG++E + + + + R + F F+ F E+ V A INN ++
Sbjct: 404 EERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEA--AVSCA--KFINNSELGE 459
Query: 441 KKAKAR 458
+ KA+
Sbjct: 460 GEDKAK 465
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKT-PKRTKGGKEVDVKR 685
+ + FSE G ++E + +D+ + KGF F+T++S V + +K+ G+++ V
Sbjct: 220 LESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSE 279
Query: 686 ATPKP 700
A +P
Sbjct: 280 AEARP 284
Score = 35.9 bits (79), Expect = 0.026
Identities = 23/81 (28%), Positives = 36/81 (44%)
Frame = +3
Query: 222 MKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 401
+K F +L F + G +E + V D TGRSRGF F+ S+ +V A
Sbjct: 91 LKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM---SSVSEVEA 147
Query: 402 AGEHTINNKKVDPKKAKARHG 464
A + N ++D + + G
Sbjct: 148 AAQQ-FNGYELDGRPLRVNAG 167
Score = 35.1 bits (77), Expect = 0.045
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 252 GTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNK 428
G D L F G++ V D ++GRS+GF F+ + + + + + + + ++ +
Sbjct: 214 GVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGR 273
Query: 429 KVDPKKAKAR 458
++ +A+AR
Sbjct: 274 QIRVSEAEAR 283
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKV 434
T+++L F YG+I + +TGR RGF FI F D + + NK +
Sbjct: 24 TERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVI 83
Query: 435 DPKKAKARHG 464
KA+ + G
Sbjct: 84 SVNKAEPKVG 93
Score = 35.5 bits (78), Expect = 0.034
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLK-TPKRTKGGKEVDVKR 685
+ + F +G I E ++ + + +GF FITF +D +K R G K + V +
Sbjct: 28 LESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNK 87
Query: 686 ATPK 697
A PK
Sbjct: 88 AEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKV 434
T+++L F YG+I + +TGR RGF FI F D + + NK +
Sbjct: 24 TERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVI 83
Query: 435 DPKKAKARHG 464
KA+ + G
Sbjct: 84 SVNKAEPKVG 93
Score = 35.5 bits (78), Expect = 0.034
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLK-TPKRTKGGKEVDVKR 685
+ + F +G I E ++ + + +GF FITF +D +K R G K + V +
Sbjct: 28 LESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNK 87
Query: 686 ATPK 697
A PK
Sbjct: 88 AEPK 91
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 401
LR+HF +G I S V D TGR+R FAF+ F + E D ++
Sbjct: 228 LRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS 271
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 613
+RN FS+FGTI+ + D+ + + F F++F S
Sbjct: 228 LRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTS 262
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 267 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 416
+L D F +G + S+ V +P TG SRG ++ + S +A+ + T
Sbjct: 123 QLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGT 172
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 383
T+ +L F YGEI +N+ D TG+S+GFAF+ ++ S
Sbjct: 48 TEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESE 616
FS++G I++V + DK + KGF F+ +E +
Sbjct: 56 FSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQ 87
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 368
LR+HF + GEI++++V D +TG S+G A++ F
Sbjct: 421 LREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEV 673
+ NFF E G +++V ++ +GF + F S L+ R G+E+
Sbjct: 313 VENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREI 367
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +3
Query: 267 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
++ + F GE+ + T+ + G RGF + F + E K +
Sbjct: 312 DVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL 355
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
TTD+ LR F +G+I+ + D T R +GF FI F + + K +
Sbjct: 18 TTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKT 643
+R FS FG I E + D + KGF FITF+SE LK+
Sbjct: 23 LRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 616
+R+ F +FG ++ + M DK N+ KGF F+ +E+E
Sbjct: 93 LRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETE 128
Score = 35.9 bits (79), Expect = 0.026
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH--TINNK 428
TT+ LRD F +G + +N+ D R +GFAF+ ++ E K + G H ++ +
Sbjct: 88 TTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI-QGMHGKFLDGR 146
Query: 429 KVDPKKAKAR 458
+ ++AK R
Sbjct: 147 VIFVEEAKTR 156
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 371
T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 17 TNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 37.5 bits (83), Expect = 0.009
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGG 664
++ FS+FG +++ ++ D+ + +GF F+TF+ E + D ++ + GG
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGSGGG 73
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/77 (19%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE-SIDKVMAAGEHTINNKKV 434
T+ +L+ G+ GE+ + + + ++G +G+AF+ F++ + + + + K++
Sbjct: 104 TEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRI 163
Query: 435 DPKKAKARHGKIFVGGL 485
+A+H ++F+G +
Sbjct: 164 KCSTTQAKH-RLFLGNV 179
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRT 655
++ F G + EV + +K KG+ F+TF S+ + + + T T
Sbjct: 108 LKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNT 156
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/47 (44%), Positives = 25/47 (53%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
TD L F YG + S+ V D GRSRGF F+ F PE+ K M
Sbjct: 214 TDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAM 259
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 368
+ LR+ FG YG+I S V N GRS+GF F+ F
Sbjct: 317 ETRLREIFGCYGQIVSAKVMCHEN-GRSKGFGFVCF 351
Score = 31.5 bits (68), Expect = 0.56
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 416
T+K+L D F + S+++ + TG+S +A+I F +P S M H+
Sbjct: 33 TEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNHS 85
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 252 GTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 401
G T L HF +GE+ + TDP TG+ G A+I F E+ + ++
Sbjct: 526 GATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 258 TDKE-LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T KE ++ HF +GEI V TD +GRS+G+ F+ F+ E+ I+ ++
Sbjct: 24 THKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRA 83
Query: 435 D 437
+
Sbjct: 84 N 84
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
++ F +FG ILE + DK + KG+ F+TF
Sbjct: 29 MKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 258 TDKE-LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T KE ++ HF +GEI V TD +GRS+G+ F+ F+ E+ I+ ++
Sbjct: 24 THKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRA 83
Query: 435 D 437
+
Sbjct: 84 N 84
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
++ F +FG ILE + DK + KG+ F+TF
Sbjct: 29 MKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 258 TDKE-LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T KE ++ HF +GEI V TD +GRS+G+ F+ F+ E+ I+ ++
Sbjct: 24 THKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRA 83
Query: 435 D 437
+
Sbjct: 84 N 84
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
++ F +FG ILE + DK + KG+ F+TF
Sbjct: 29 MKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 368
++ +LR F A+G +E + + DP TG+ +GF FI F
Sbjct: 277 SELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
Score = 31.9 bits (69), Expect = 0.42
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
+R F FG + V++P D Q KGF FI F
Sbjct: 281 LRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESI-NVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNK 428
+K L D F A+G I S + DP+TG SRGF FI + + E+ D + + G++ N +
Sbjct: 125 EKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQ 183
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
T+ ++R+ ++G + N+ D TG S+G+AF V++ P D AA
Sbjct: 387 TEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +3
Query: 255 TTDKEL-RDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 431
+TD EL ++ FG++G+I V D +G SRGF F+ + + E + M A + NK+
Sbjct: 46 STDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA----MQNKE 101
Query: 432 VD 437
+D
Sbjct: 102 LD 103
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLK 640
++ F FG I++ + D+ +GF F+T++S V N+ ++
Sbjct: 52 LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 258 TDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 401
TD L++ F Y + V TDP+TGRS+G+ F+ F ++ MA
Sbjct: 128 TDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 440
++++R FG G ++SI + +TG+ RG A+ F E + +A KK+
Sbjct: 664 EEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISI 723
Query: 441 KKAKARHGK 467
++ + GK
Sbjct: 724 ARSNPKKGK 732
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/63 (20%), Positives = 29/63 (46%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
IR FF + G + + + K + +G + F + + + ++ GK++ + R+
Sbjct: 667 IRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARS 726
Query: 689 TPK 697
PK
Sbjct: 727 NPK 729
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 440
++++R FG G ++SI + +TG+ RG A+ F E + +A KK+
Sbjct: 664 EEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISI 723
Query: 441 KKAKARHGK 467
++ + GK
Sbjct: 724 ARSNPKKGK 732
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/63 (20%), Positives = 29/63 (46%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
IR FF + G + + + K + +G + F + + + ++ GK++ + R+
Sbjct: 667 IRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARS 726
Query: 689 TPK 697
PK
Sbjct: 727 NPK 729
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +3
Query: 264 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK 443
++L + F +GEIE + D TGR +GFA V+++ ES K + T +
Sbjct: 241 QKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCH 300
Query: 444 KA 449
KA
Sbjct: 301 KA 302
Score = 36.3 bits (80), Expect = 0.020
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 374
T L D F YGEIE D +G+S+G+ FI+FK+
Sbjct: 139 TKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKS 178
Score = 35.1 bits (77), Expect = 0.045
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 518 FFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRATPK 697
FFS FG I E + DK + KGF + S L+ P +T G + +A
Sbjct: 246 FFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDG 305
Query: 698 P 700
P
Sbjct: 306 P 306
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 371
TD L D F A+ V D TGRSRGF F+ F+
Sbjct: 160 TDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFR 197
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 392
TDK+L HF G++ S + +P T SRGFAF+ + + ++
Sbjct: 84 TDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 128
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 392
TDK+L HF G++ S + +P T SRGFAF+ + + ++
Sbjct: 83 TDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 127
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 255 TTDKELRDH-FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINNK 428
T KE+ ++ F G++ S V P T +S GF F+ F + E ++ ++A + +
Sbjct: 187 TVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQ 246
Query: 429 KVDPKKA 449
K+ KA
Sbjct: 247 KIRVNKA 253
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
T+++L +G +E + V D +GRSR F F K+ E + V+
Sbjct: 88 TNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVV 134
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 616
+ N FSE G ++ ++ ++ GF F+TF SE
Sbjct: 193 LENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSE 228
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTKGGKEVDVKRA 688
I F+EFG + + ++ D+ + KGF F+TF+ E D ++T G+E+D +
Sbjct: 60 IERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDE----DSMRTAIDRMNGQELDGRNI 115
Query: 689 T 691
T
Sbjct: 116 T 116
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 386
T ++ + F +GE+ + D TGRS+GF F+ FK +S+
Sbjct: 55 TDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 37.5 bits (83), Expect = 0.009
Identities = 14/50 (28%), Positives = 31/50 (62%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
T ++++ + FG +GEI+++N+ D +G +G+A I ++ E ++A
Sbjct: 106 TQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISA 155
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 616
I N F +FG I + + D+ KG+ I +E +
Sbjct: 111 ITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKK 146
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 380
D++L++ F YG + S V +P G SRGF F+ + PE
Sbjct: 345 DEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 383
+K L + F ++G I S V D TGRS+G+ F+ F+ ES
Sbjct: 149 NKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEES 188
Score = 31.5 bits (68), Expect = 0.56
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESE 616
FS FGTIL ++ D T + KG+ F+ FE E
Sbjct: 156 FSSFGTILSCKVAMDVT-GRSKGYGFVQFEKE 186
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 258 TDKE-LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T KE + DHF YG+I + +D T RS+G+ F+ FK ++ + IN ++
Sbjct: 28 THKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRA 87
Query: 435 D 437
+
Sbjct: 88 N 88
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFE 610
F ++G ILE + DK + KG+ F+TF+
Sbjct: 37 FIKYGDILEAVIISDKLTRRSKGYGFVTFK 66
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVM 398
T +K+L D F +G + + D +TG+SR F F+ F+ +S+ D +M
Sbjct: 18 TDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIM 66
Score = 34.7 bits (76), Expect = 0.060
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLL 637
+ + FS+FG +++ ++ +D+ + + F F+TFE E + D +
Sbjct: 23 LTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAI 65
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 36.7 bits (81), Expect = 0.015
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +3
Query: 219 AMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-V 395
A K F TT++ L + F G++ + D + RS+GF F+ F + + K +
Sbjct: 33 ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92
Query: 396 MAAGEHTINNKKVDPKKAKAR 458
M +N + + AKA+
Sbjct: 93 MEFNGQQLNGRTIFVDYAKAK 113
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFES 613
FS+ G ++E ++ D+ ++ KGF F+TF S
Sbjct: 54 FSKCGQVVEAQIVMDRVSDRSKGFGFVTFAS 84
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTK-GGKEVDVKR 685
+ N F+E G ++E + +D+ + KGF F+T S V + + G+++ V
Sbjct: 265 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSE 324
Query: 686 ATPKP 700
A +P
Sbjct: 325 AEARP 329
Score = 36.3 bits (80), Expect = 0.020
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 252 GTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNK 428
G D L + F G++ V D ++GRS+GF F+ + + + K + + ++ +
Sbjct: 259 GVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGR 318
Query: 429 KVDPKKAKAR 458
++ +A+AR
Sbjct: 319 QIRVSEAEAR 328
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +3
Query: 222 MKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 389
+K F +L F + G +E + V D TGRSRGF F+ ++
Sbjct: 99 LKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPKRTK-GGKEVDVKR 685
+ N F+E G ++E + +D+ + KGF F+T S V + + G+++ V
Sbjct: 273 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSE 332
Query: 686 ATPKP 700
A +P
Sbjct: 333 AEARP 337
Score = 36.3 bits (80), Expect = 0.020
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 252 GTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNK 428
G D L + F G++ V D ++GRS+GF F+ + + + K + + ++ +
Sbjct: 267 GVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGR 326
Query: 429 KVDPKKAKAR 458
++ +A+AR
Sbjct: 327 QIRVSEAEAR 336
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +3
Query: 222 MKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 389
+K F +L F + G +E + V D TGRSRGF F+ ++
Sbjct: 99 LKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 36.3 bits (80), Expect = 0.020
Identities = 22/89 (24%), Positives = 38/89 (42%)
Frame = +3
Query: 132 SQDHNSAAAPGRDDDRCEXXXXXXXXXEDAMKTFCWWAELGTTDKELRDHFGAYGEIESI 311
+ D +P D+DR E + F +++LRD GEI +
Sbjct: 87 ADDDEKPPSPIDDEDR-EKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEV 145
Query: 312 NVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
+ D ++G S+G+AF+ FK + K +
Sbjct: 146 RLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 258 TDKELRDHFGAYGE-IESINVKTDP-NTGRSRGFAFIVF 368
T+ E R G +E+I + DP NT R+RGFAF+++
Sbjct: 208 TEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 36.3 bits (80), Expect = 0.020
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKTPK-RTKGGKEVDVKRATPK 697
FSE G + + +K ++ +GF F+ F + VN ++ T GG+ + VK+A +
Sbjct: 40 FSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHR 99
Query: 698 P 700
P
Sbjct: 100 P 100
Score = 35.1 bits (77), Expect = 0.045
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAA 404
T +E++ F +GE+ES+++ T R G AF+ FK A S+ + AA
Sbjct: 573 TKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKV 434
T+ +L + F G + + T+ + RGFAF+ F E +++ + T+ +++
Sbjct: 32 TNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRI 91
Query: 435 DPKKAKAR 458
K+A R
Sbjct: 92 TVKQAAHR 99
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 35.9 bits (79), Expect = 0.026
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 401
TT + LR F +GE+ V TD +G S+GF F+ + E K +A
Sbjct: 67 TTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
+R F++FG + + ++ D+ KGF F+ +
Sbjct: 72 LRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRY 104
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 35.9 bits (79), Expect = 0.026
Identities = 13/32 (40%), Positives = 24/32 (75%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFESE 616
FS++G +L+V++ DK + + KGF ++TF S+
Sbjct: 41 FSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSK 72
Score = 35.5 bits (78), Expect = 0.034
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
+T++ L F YG++ ++V D R +GFA++ F + E +K +
Sbjct: 32 STEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 35.5 bits (78), Expect = 0.034
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Frame = +3
Query: 252 GTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG-------- 407
G + E+ F +G ++ + V + TG+S+ F FI F+ PE + +AAG
Sbjct: 70 GFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAE--IAAGAMNDYLLM 127
Query: 408 EHTINNKKVDPKKAK 452
EH + ++P+ K
Sbjct: 128 EHMLKVHVIEPENVK 142
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPV 622
I FFS+FGT+ V + +K + K F FI FE V
Sbjct: 76 IEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEV 113
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 35.1 bits (77), Expect = 0.045
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 249 LGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 419
L +LRD F +G ++ I + + TG RGF F+ ++ E + M H +
Sbjct: 56 LDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKV 112
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/58 (20%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE-SEPVVNDLLKTPKRTKGGKEVDV 679
+R+ F FG + ++ +P + + +GF F+ + +E + + + GG+E+ +
Sbjct: 63 LRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAI 120
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 35.1 bits (77), Expect = 0.045
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 413
+T+++L +G + + V + N+G SRGFAFI F ++ +M EH
Sbjct: 309 STEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH 361
Score = 35.1 bits (77), Expect = 0.045
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI---NNKK 431
++ LR F + I+ + + D T SRGFAF+ F + E K + A T N K
Sbjct: 471 EEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKI 530
Query: 432 VDPKKAKARHG 464
+ AK+ HG
Sbjct: 531 LRVAYAKSVHG 541
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 34.7 bits (76), Expect = 0.060
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 225 KTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 383
K F T++K LR F +GE+ + + D + RS+G+AF+ + E+
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEA 335
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 34.3 bits (75), Expect = 0.079
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 437
++++ D+F +G ++ + + + R F F+ F PE++ ++A G H + + +V
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQ----QKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVL 224
Query: 438 PKKAKARHGKI 470
K K + GK+
Sbjct: 225 VKPYKEK-GKV 234
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 34.3 bits (75), Expect = 0.079
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 371
TD L F + V D TGRSRGF F+ F+
Sbjct: 156 TDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFR 193
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 389
TT+++L + F GEI+ I + D NT GF F++F + E +
Sbjct: 45 TTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTE 89
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 380
T++ L+ F A+GEI + + D RS+G+AFI F + +
Sbjct: 51 TSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
IR +F + G +LEV + DK Q++G CF+ +
Sbjct: 136 IRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKY 168
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
T++E+R +F +G + + + D TG+ +G F+ + + D+ + A
Sbjct: 132 TEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
IR +F + G +LEV + DK Q++G CF+ +
Sbjct: 136 IRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKY 168
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
T++E+R +F +G + + + D TG+ +G F+ + + D+ + A
Sbjct: 132 TEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 401
+T+ E+R +F + G I ++ K P G G AFI F + + +A
Sbjct: 172 STEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALA 220
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 33.9 bits (74), Expect = 0.10
Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Frame = +3
Query: 93 NQLNGNAENGGGDSQDHNSAAAPGRDDDRCEXXXXXXXXXEDAMKTFCWW-AELGTTDKE 269
+Q N + G ++ +PGR + R E + + + + A+ TD++
Sbjct: 276 HQRNAHRSGAGQFGEEGYWFGSPGRHE-RDEFMGMGDKSNSASKQIYLTFPADSSFTDED 334
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKK--VDP 440
+ ++FG +G ++ + + + R F F+ F E++ ++A G H I + + V P
Sbjct: 335 VSNYFGNFGPVQDVRIPYQ----QKRMFGFVTFLHSETVRIILARGNPHFICDSRVLVKP 390
Query: 441 KKAKAR 458
K K R
Sbjct: 391 YKEKGR 396
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLL 637
+ N+F FG + +V +P+ Q++ F F+TF V +L
Sbjct: 335 VSNYFGNFGPVQDVRIPY----QQKRMFGFVTFLHSETVRIIL 373
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
T + +L + F +G + + V D TG SRGF F+ F + E + +
Sbjct: 224 TREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAI 271
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +3
Query: 246 ELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINN 425
+ T+ ++ F +G++ + V D +T +SRG AF+++ + E K + + I N
Sbjct: 65 DFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILN 124
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 410
TT+ +L + FG YG+I+ I V + SRGFAFI ++ +++ +AA E
Sbjct: 29 TTESDLTELFGRYGDIDRITVYS------SRGFAFIYYR---HVEEAVAAKE 71
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 419
TT+ LR+ YG I+++ + TG SRG+ F+ ++ + + + H++
Sbjct: 75 TTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSL 129
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 294 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 401
G ++++ V TDP T +G AF+ F ES+ K +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 419
L +F ++GEI + V TG S G+A+I K E +K + G H +
Sbjct: 254 LSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALELGRHDV 301
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 258 TDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVF 368
TD L D F YG ++ V D TGRS+G+ F+ F
Sbjct: 166 TDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRF 203
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 282 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
F +G++ V +D TGRSRGF F+ ++ +AA
Sbjct: 227 FSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFES-EPVVNDLLKTPKRTKGGKEVDVKRATPK 697
F + GT+ E+ +++ +Q +GF F+T + E + K G+ + V RA P+
Sbjct: 133 FEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPR 192
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVN 628
+ FSE G +++ + D+ + +GF F+ +E VN
Sbjct: 223 LERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVN 262
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 282 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 458
F G +E V + +T +SRGF F+ E +K V +N +++ +A R
Sbjct: 133 FEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPR 192
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
L F +G++ V D TGRSRGF F+ + +++ ++A
Sbjct: 260 LEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKT-PKRTKGGKEVDVKR 685
+ FSE G ++E + +D+ + +GF F+T +N+ + + G+ + V
Sbjct: 260 LEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNV 319
Query: 686 ATPKP 700
A +P
Sbjct: 320 AEERP 324
Score = 29.1 bits (62), Expect = 3.0
Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 2/131 (1%)
Frame = +3
Query: 72 AQDITTDNQLNGNAENGGGDSQDHNSA-AAPGRDDDRCEXXXXXXXXXEDAMKTFCWWAE 248
+QD++ ++ G+A G D + + G +R E E+A K F
Sbjct: 104 SQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPS----EEA-KLFVGNLA 158
Query: 249 LGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA-PESIDKVMAAGEHTINN 425
+ L F G +E V + T +SRGF F+ + E+ V + +N
Sbjct: 159 YDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNG 218
Query: 426 KKVDPKKAKAR 458
+ + KA R
Sbjct: 219 RLLTVNKAAPR 229
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFES-EPVVNDLLKTPKRTKGGKEVDVKRATPK 697
F + GT+ E+ +++ +Q +GF F+T S + + K + G+ + V +A P+
Sbjct: 170 FEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPR 229
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 264 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 368
+ELR+ F +G + + + D +G+ RGFAF+ F
Sbjct: 61 EELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
Score = 31.1 bits (67), Expect = 0.74
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLKT-PKRTKGGKEVDV 679
+R F FG + +V +P D Q +GF F+ F + ++ +R+ G+E+ V
Sbjct: 63 LREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITV 120
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 380
T++ LRD F GEI + +K + G+SR FA+I F+ +
Sbjct: 15 TEERLRDVFSRKGEIADVKLKR-KSDGKSRQFAYIGFRTEQ 54
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
T+ ++R+ ++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 371 TESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
T+ ++R+ ++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 371 TESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
T+ ++R+ ++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 371 TESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 258 TDKELRDHFG-AYGEIESINVKTDPNTGRSRGFAFIVF 368
TD L + F Y ++S V D NTGRS+G+ F+ F
Sbjct: 214 TDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRF 251
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESI----NVKTDPNTGRSRGFAFIVFK 371
TD L D F A+ S V D TGRSRGF F+ F+
Sbjct: 160 TDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFR 201
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 371
TD L F Y V D TGRSRGF F+ F+
Sbjct: 151 TDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFR 188
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFC--FITFESEPVVNDLLKTPKRTKGGKEVDVK 682
I F FGTI + + F +T+ G C F+ FE V + +K GG++V ++
Sbjct: 273 IEEEFKNFGTI-KPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIE 331
Query: 683 RATPKP 700
P P
Sbjct: 332 ERRPNP 337
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFC--FITFESEPVVNDLLKTPKRTKGGKEVDVK 682
I F FGTI + + F +T+ G C F+ FE V + +K GG++V ++
Sbjct: 332 IEEEFKNFGTI-KPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIE 390
Query: 683 RATPKP 700
P P
Sbjct: 391 ERRPNP 396
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = +3
Query: 213 EDAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 392
E+++K F ++ +L F + ++ +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 393 VMAAGEHTINNKKVDP 440
++ A +NKK P
Sbjct: 75 LVNA----CHNKKTLP 86
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = +3
Query: 213 EDAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 392
E+++K F ++ +L F + ++ +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 393 VMAAGEHTINNKKVDP 440
++ A +NKK P
Sbjct: 75 LVNA----CHNKKTLP 86
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV--MAAGEHTINNKKV 434
D+EL F ++G + S V D TG S+ F F+ + + + M G H + KK+
Sbjct: 362 DQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRH-LGGKKL 420
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/38 (28%), Positives = 26/38 (68%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 368
+++ +++ F +YG I+ +++ TD T + +G+AFI +
Sbjct: 149 SSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 31.9 bits (69), Expect = 0.42
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 437
D+++ +F +G ++ + + + R F F+ F PE++ V+A G H I + +V
Sbjct: 273 DEDVATYFSLFGTVQDVRIPYQ----QKRMFGFVSFAHPETVKVVLARGNPHFICDSRVL 328
Query: 438 PKKAKARHGKI 470
K K + GK+
Sbjct: 329 VKPYKEK-GKV 338
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 437
++++ ++F +G ++ + + + R F F+ F PE++ ++A G H + + +V
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVL 327
Query: 438 PKKAKARHGKI 470
K K + GK+
Sbjct: 328 VKPYKEK-GKV 337
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 258 TDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVF 368
+D L + F G Y ++ V D NTGRS+G+ F+ F
Sbjct: 225 SDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 31.9 bits (69), Expect = 0.42
Identities = 19/69 (27%), Positives = 36/69 (52%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 440
++++RD F A+GEIESI + D + AF+ + + E +K A + N ++
Sbjct: 241 EQDIRDQFYAHGEIESIRILAD------KACAFVTYTSREGAEK---AAQELSNRLVING 291
Query: 441 KKAKARHGK 467
++ K G+
Sbjct: 292 QRLKLTWGR 300
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 31.5 bits (68), Expect = 0.56
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 258 TDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPES 383
TD L + F A Y ++ V D TGRS+G+ F+ F A ES
Sbjct: 185 TDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRF-ADES 226
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 440
++++RD F A+GEIESI + + + AF+ + E +K A E N V+
Sbjct: 241 EQDIRDQFYAHGEIESIRILAE------KACAFVTYTTREGAEK---AAEELSNRLVVNG 291
Query: 441 KKAKARHGK 467
++ K G+
Sbjct: 292 QRLKLTWGR 300
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
T + L F G++ V D +TGRSRG+ F+ + + ++ +
Sbjct: 189 TSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETAL 235
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 237 WWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 377
WW TTD EL YG ++ + + +G+S+G+ + F P
Sbjct: 243 WW----TTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDP 285
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 31.1 bits (67), Expect = 0.74
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 300 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 452
IE++ V DP+ +G A+++FK E+ + V+ G + +++ + K
Sbjct: 313 IEAVRVIRDPHLNIGKGIAYVLFKTREAANLVLKKGYLKLRERELRISRVK 363
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
T +L + F +G + +V D T SRGF F+ F + E + +
Sbjct: 185 TRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAI 232
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 31.1 bits (67), Expect = 0.74
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 258 TDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
+D L + F Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 297 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
EI S+ V + N G S G+ F+ F++ + DKV+
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 31.1 bits (67), Expect = 0.74
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 258 TDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
+D L + F Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 297 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
EI S+ V + N G S G+ F+ F++ + DKV+
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 30.7 bits (66), Expect = 0.98
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 258 TDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
+D L + F Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 211 SDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 258
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 30.7 bits (66), Expect = 0.98
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 440
D+EL F +G++ S V D TG S+ F FI + + + + +T+N ++
Sbjct: 352 DQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI----NTMNGCQLSG 407
Query: 441 KKAKAR 458
KK K +
Sbjct: 408 KKLKVQ 413
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +3
Query: 213 EDAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 392
E+ +K F T+ +L F + + +N+ + T RG F+ E DK
Sbjct: 9 EERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADK 68
Query: 393 VMAAGEHTINNKKVDP 440
V+ ++ +NKK P
Sbjct: 69 VI----NSFHNKKTLP 80
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 30.7 bits (66), Expect = 0.98
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 440
D+EL F +G++ S V D TG S+ F FI + + + + +T+N ++
Sbjct: 343 DQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI----NTMNGCQLSG 398
Query: 441 KKAKAR 458
KK K +
Sbjct: 399 KKLKVQ 404
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +3
Query: 213 EDAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 392
E+ +K F T+ +L F + + +N+ + T RG F+ E DK
Sbjct: 9 EERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADK 68
Query: 393 VMAAGEHTINNKKVDP 440
V+ ++ +NKK P
Sbjct: 69 VI----NSFHNKKTLP 80
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTD 326
++++ DHF AYGE+ESI V +
Sbjct: 238 EQDIHDHFYAYGEMESIRVMAE 259
>At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 193
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
++++RDHF YGEIESI + P+ G AF+ + + +K M
Sbjct: 91 EQDIRDHFCPYGEIESIVI--FPHRGGGT-CAFLTYTTRLAAEKAM 133
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 440
+ L++ FG +GE+ + + D RG ++ FKA +K + ++ ++D
Sbjct: 111 EAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----AQLYMDGAQIDG 166
Query: 441 KKAKA 455
K KA
Sbjct: 167 KVVKA 171
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP 440
+ L++ FG +GE+ + + D RG ++ FKA +K + ++ ++D
Sbjct: 111 EAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----AQLYMDGAQIDG 166
Query: 441 KKAKA 455
K KA
Sbjct: 167 KVVKA 171
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/82 (25%), Positives = 32/82 (39%)
Frame = +3
Query: 213 EDAMKTFCWWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 392
E+ + FC D L F + V D TG+++G+ F+ F P
Sbjct: 134 ENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPAD--- 190
Query: 393 VMAAGEHTINNKKVDPKKAKAR 458
+AA +N K V + K R
Sbjct: 191 -LAAALKEMNGKYVGNRPIKLR 211
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 237 WWAELGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 368
WW TTD E+ YG ++ I + +G+S+G+ + F
Sbjct: 211 WW----TTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITFES-EPVVNDLLKTPKRTKGGKEVDVKRATPK 697
FS+FG ++ + D + + +GF FI FES + +L R G K + V+R TPK
Sbjct: 37 FSDFGKVIRSVLAKD-FRGESRGFAFIEFESADSAGRAMLHMDGRLIGQKILCVQR-TPK 94
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 336 GRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
G SRGFAFI F++ +S + M + + +K+
Sbjct: 54 GESRGFAFIEFESADSAGRAMLHMDGRLIGQKI 86
>At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing
protein
Length = 313
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +3
Query: 249 LGTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 428
LG TD++L++ F G+I + ++T T R++ A++ FK + + + TI +
Sbjct: 13 LGATDRDLKEFFSFSGDI--LYLETQSETERTK-LAYVTFKDLQGAETAVLLSGATIVDS 69
Query: 429 KV 434
V
Sbjct: 70 SV 71
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 60 NDNFAQDITTDNQLNGNAENGGGDSQDHNSAAAPGRDDDR 179
NDN + +N N N NGGG ++ S P R+ DR
Sbjct: 119 NDNNGNNNNGNNNDNNNQNNGGG--SNNRSPPPPSRNSDR 156
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 57 NNDNFAQDITTDNQLNGNAENGGGDSQDHNS 149
NN N D +N N N +N G+++D+N+
Sbjct: 76 NNGNNNNDNNNNNNGNNNNDNNNGNNKDNNN 106
>At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 component,
putative / oxoglutarate decarboxylase, putative /
alpha-ketoglutaric dehydrogenase, putative similar to
SP|P20967 2-oxoglutarate dehydrogenase E1 component,
mitochondrial precursor (EC 1.2.4.2)
(Alpha-ketoglutarate dehydrogenase) {Saccharomyces
cerevisiae}; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF00676:
Dehydrogenase E1 component
Length = 1025
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 685 TLHIDLLSTFCSFGSLKQIIYNWLRFKCDETEALSLVLC 569
TLH+ L +C+ G++ ++ N + F D E S C
Sbjct: 415 TLHLSALPNYCTGGTVHIVVNNQVAFTTDPREGRSSQYC 453
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 416
T ++L HF YG+I ++ ++ R FAFI ++A E + + A ++
Sbjct: 68 TRTRDLEKHFEPYGKIVNVRIR--------RNFAFIQYEAQEDATRALDASNNS 113
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 416
T ++L HF YG+I ++ ++ R FAFI ++A E + + A ++
Sbjct: 109 TRTRDLEKHFEPYGKIVNVRIR--------RNFAFIQYEAQEDATRALDASNNS 154
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
++++L + FG YGEI+ I + PN R F+ F S D + A +N ++
Sbjct: 234 SNRDLENIFGVYGEIKEI--RETPN---KRHHKFVEFFDVRSADAALKA----LNRTEIA 284
Query: 438 PKKAKARHGK 467
K+ K H +
Sbjct: 285 GKRIKLEHSR 294
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
+R +F +FG +++ + + + KG+ FITF
Sbjct: 28 LRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 521 FSEFGTILEVEMPFDKTKNQRKGFCFITF 607
F FG I +V+ P D+ + + F F+TF
Sbjct: 33 FIPFGDIKDVKTPLDQANQKHRSFGFVTF 61
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 258 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 377
T++EL D F A+G + S+ V P G+AF+ F+ P
Sbjct: 14 TERELEDEFRAFGVVRSVWVARRP-----PGYAFLDFEDP 48
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEPVVNDLLK 640
+R F+ F +++ D+ + KGF FITFESE LK
Sbjct: 87 LRQLFAPFARLIK-----DQQTQRPKGFGFITFESEDDAQKALK 125
>At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing
protein predicted proteins - Arabidopsis thaliana
Length = 259
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/61 (21%), Positives = 34/61 (55%)
Frame = +3
Query: 252 GTTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 431
G T+ ++++ F GE+ESI+++++ ++ A++ FK + + + +I ++
Sbjct: 16 GATEHDIKEFFSFSGEVESIDIQSNEHS------AYVTFKETQGAETAVLLSGASIADQS 69
Query: 432 V 434
V
Sbjct: 70 V 70
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 398
L HF + GEI + V TD G + AF+ + + DK +
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEGEGAEDKAL 175
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGF 353
L HF GEI + V +P+TG +GF
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGF 391
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +3
Query: 102 NGNAENGG--GDSQDHNSAAAPGRDDDR 179
+GN E G GD D++ PG DDD+
Sbjct: 962 DGNHERGSESGDGDDYDDGDGPGSDDDK 989
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
T ++L HF YG+I ++ ++ R FAFI ++A E + + A
Sbjct: 108 TRTRDLERHFEPYGKIVNVRIR--------RNFAFIQYEAQEDATRALDA 149
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 404
T ++L HF YG+I ++ ++ R FAFI ++A E + + A
Sbjct: 108 TRTRDLERHFEPYGKIVNVRIR--------RNFAFIQYEAQEDATRALDA 149
>At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing
protein RRM, RNA recognition motif
Length = 87
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
L +HF + G I ++ + P T G A I ++ +KVM + +K+
Sbjct: 5 LTNHFKSCGVIAMVSFRRHPETDVVNGLATITMMGNDADEKVMLLNGSELGGRKL 59
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 368
D L + F ++GEI V D TG S+G+ F+ +
Sbjct: 493 DDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKY 528
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 261 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 368
D L + F ++GEI V D TG S+G+ F+ +
Sbjct: 493 DDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKY 528
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 416
T + ++ HF YG++ ++ ++ R F+F+ F+ E K + A + +
Sbjct: 105 TKEHDIEKHFEPYGKVTNVRIR--------RNFSFVQFETQEDATKALEATQRS 150
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 102 NGNAENGGGDSQDHNSAAAPGRDDD 176
+G AE+GGG S SA+A +DD
Sbjct: 78 SGGAEDGGGTSNGSLSASATATEDD 102
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T ++++ HF YG++ ++ ++ R FAF+ F E K + + T N+K +
Sbjct: 81 TRERDMERHFEPYGKVLNVRMR--------RNFAFVQFATQEDATKAL---DSTHNSKLL 129
Query: 435 D 437
D
Sbjct: 130 D 130
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 255 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 434
T ++++ HF YG++ ++ ++ R FAF+ F E K + + T N+K +
Sbjct: 107 TRERDMERHFEPYGKVLNVRMR--------RNFAFVQFATQEDATKAL---DSTHNSKLL 155
Query: 435 D 437
D
Sbjct: 156 D 156
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEPVVNDLLKTPKRTKGGKEVDVKR 685
+R F FG++ V++P D+T KGF F+ F E N L + G+ + V
Sbjct: 301 LRKVFESFGSVELVQVPRDET-GLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKVSA 359
Query: 686 AT 691
T
Sbjct: 360 VT 361
>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 259
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 270 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 437
L +HF + G++ I V +TG S G+AFI K + G H + +K+D
Sbjct: 137 LWNHFSSCGKVYLIYVPIACSTGASVGYAFIDMK--NETKGLTLNGSH-LGGRKID 189
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 509 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 607
+R F +FG + ++ +P D +GF F+ F
Sbjct: 52 LRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQF 84
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,963,402
Number of Sequences: 28952
Number of extensions: 291671
Number of successful extensions: 1299
Number of sequences better than 10.0: 187
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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