Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20579
         (697 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.    62   1e-11
AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.    62   1e-11
AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.    62   1e-11
AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.    62   1e-11
U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    50   5e-08
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    24   0.43 
AY146716-1|AAO12076.1|  159|Anopheles gambiae odorant-binding pr...    23   9.2  
AY028784-1|AAK32958.2|  499|Anopheles gambiae cytochrome P450 pr...    23   9.2  

>AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 62.5 bits (145), Expect = 1e-11
 Identities = 25/60 (41%), Positives = 41/60 (68%)
 Frame = +3

Query: 513 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 692
           +Y  +    +++ P+P+VS  VVEPYN+ L+ H  +E++D  + +DNEA+YDIC R L +
Sbjct: 54  EYPDRIMNTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKV 113



 Score = 41.9 bits (94), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +1

Query: 355 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 507
           HYT G E+VD VLD +RK  + C  LQGF + H            LL+ ++
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKI 51


>AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 62.5 bits (145), Expect = 1e-11
 Identities = 25/60 (41%), Positives = 41/60 (68%)
 Frame = +3

Query: 513 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 692
           +Y  +    +++ P+P+VS  VVEPYN+ L+ H  +E++D  + +DNEA+YDIC R L +
Sbjct: 54  EYPDRIMNTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKV 113



 Score = 41.9 bits (94), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +1

Query: 355 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 507
           HYT G E+VD VLD +RK  + C  LQGF + H            LL+ ++
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKI 51


>AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 62.5 bits (145), Expect = 1e-11
 Identities = 25/60 (41%), Positives = 41/60 (68%)
 Frame = +3

Query: 513 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 692
           +Y  +    +++ P+P+VS  VVEPYN+ L+ H  +E++D  + +DNEA+YDIC R L +
Sbjct: 54  EYPDRIMNTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKV 113



 Score = 41.9 bits (94), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +1

Query: 355 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 507
           HYT G E+VD VLD +RK  + C  LQGF + H            LL+ ++
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKI 51


>AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 62.5 bits (145), Expect = 1e-11
 Identities = 25/60 (41%), Positives = 41/60 (68%)
 Frame = +3

Query: 513 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 692
           +Y  +    +++ P+P+VS  VVEPYN+ L+ H  +E++D  + +DNEA+YDIC R L +
Sbjct: 54  EYPDRIMNTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKV 113



 Score = 41.9 bits (94), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +1

Query: 355 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 507
           HYT G E+VD VLD +RK  + C  LQGF + H            LL+ ++
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKI 51


>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 50.4 bits (115), Expect = 5e-08
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = +2

Query: 38  MRECISVHVGQAGVQIGNACWE 103
           MRECISVHVGQAGVQIGN CW+
Sbjct: 1   MRECISVHVGQAGVQIGNPCWD 22



 Score = 39.5 bits (88), Expect = 1e-04
 Identities = 22/46 (47%), Positives = 24/46 (52%)
 Frame = +3

Query: 93  PAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELASTYPV 230
           P    T WS AS+   RCP+TR S      ST SS R   AST PV
Sbjct: 19  PCWDCTVWSMASNRTVRCPRTRRSEAVMTRSTPSSPRLAQASTCPV 64


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.8 bits (49), Expect(2) = 0.43
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 144 CPQTRPSGVETILSTLSSARPELAS 218
           C   RPS ++   ++ S  RP+LA+
Sbjct: 164 CGSARPSRIDVAFASPSICRPDLAA 188



 Score = 21.8 bits (44), Expect(2) = 0.43
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 87  VMPAGSFTAWSTASSLMARCPQTRPSGV 170
           V+ AG F AW TA        +T+P G+
Sbjct: 116 VLLAGDFNAWHTAWG----SERTKPKGI 139


>AY146716-1|AAO12076.1|  159|Anopheles gambiae odorant-binding
           protein AgamOBP12 protein.
          Length = 159

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +3

Query: 456 LRWRYRLWVHFLIDGASLVDYGK-----KSKLEFAIYPAPQVSTAVVEPYNSI 599
           +R+ + LW+  LI  +SLV  G+     K  L+ A YP    +  +V P + I
Sbjct: 4   VRYHFVLWLLILIGVSSLVPPGECLDISKVTLDAAFYPLFGCARDLVVPEDLI 56


>AY028784-1|AAK32958.2|  499|Anopheles gambiae cytochrome P450
           protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 166 GWRRFFQHFLQRDRSWQAR 222
           GW   + HF QR R W  R
Sbjct: 12  GWLWIYLHFNQRYRFWVER 30


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 766,548
Number of Sequences: 2352
Number of extensions: 16501
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70668195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)