Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20578
(703 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 5e-23
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 7e-14
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 7e-10
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 54 1e-07
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 48 1e-05
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 45 7e-05
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 42 4e-04
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 40 0.002
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 39 0.003
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 39 0.005
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 39 0.005
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 37 0.018
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.024
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 36 0.032
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.042
SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.056
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.056
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 35 0.073
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 34 0.097
SB_34206| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.22
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.30
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.39
SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28) 31 0.68
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 31 0.90
SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14) 31 1.2
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 31 1.2
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 30 1.6
SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012) 30 2.1
SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039) 30 2.1
SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_27874| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 29 3.6
SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06) 29 3.6
SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 29 3.6
SB_45532| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-40) 29 4.8
SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35) 28 6.4
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 105 bits (251), Expect = 5e-23
Identities = 64/144 (44%), Positives = 82/144 (56%), Gaps = 4/144 (2%)
Frame = +2
Query: 257 SAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 433
+A +SKTA APIERVKLL+Q Q + K D YKG++D R + +G LSFWRGN A
Sbjct: 19 AAIISKTAAAPIERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEGFLSFWRGNLA 78
Query: 434 NVIRYFPTQALNFAFKDKYKQVFLGVLTRRRSSGVTSLVIWXXXXXXXXXLCASCTPSTS 613
N IRYFPTQALNFAFKD+ K +F ++ S + S
Sbjct: 79 NCIRYFPTQALNFAFKDQVKALF---KPKKTDSNAIKFSKNIASGGAAGAMSLFFVYSLD 135
Query: 614 HV-TRLAAD--VGKGDGQREFSGL 676
+ TRLA D VGK G+R+F+G+
Sbjct: 136 YCRTRLANDAKVGKKGGERQFNGM 159
Score = 36.7 bits (81), Expect = 0.018
Identities = 16/51 (31%), Positives = 32/51 (62%)
Frame = +2
Query: 353 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 505
+YKG +D ++I K++G +S +G AN++R + F DK+K++++
Sbjct: 248 KYKGSIDCTIQILKKEGAMSLMKGAGANILRGMAGAGVLAGF-DKFKELYV 297
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 74.5 bits (175), Expect = 7e-14
Identities = 34/80 (42%), Positives = 57/80 (71%)
Frame = +2
Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 436
+ AVS+T+V+P+ERVK+LLQ+Q + ++KG++ ++I KE+G+L +++GN N
Sbjct: 44 AGAVSRTSVSPLERVKILLQIQ------VKNPKFKGVLPTLIQIGKEEGILGYFKGNGTN 97
Query: 437 VIRYFPTQALNFAFKDKYKQ 496
VIR FP A+ FA ++YK+
Sbjct: 98 VIRIFPYSAVQFAAYEEYKK 117
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 61.3 bits (142), Expect = 7e-10
Identities = 34/80 (42%), Positives = 48/80 (60%)
Frame = +2
Query: 260 AAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 439
A VS+TA AP++R+K+LLQVQ A+ GIV F + +E G+ S WRGN ANV
Sbjct: 147 AGVSRTATAPLDRLKVLLQVQ------ASSTNRFGIVSGFKMMLREGGIKSLWRGNGANV 200
Query: 440 IRYFPTQALNFAFKDKYKQV 499
I+ P + F +K K++
Sbjct: 201 IKIAPESGIKFFAYEKAKKL 220
Score = 36.7 bits (81), Expect = 0.018
Identities = 20/83 (24%), Positives = 44/83 (53%)
Frame = +2
Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 436
+ S+T++ P+E +K L ++ + Y+G++ A I +++G+ SF+RG F +
Sbjct: 240 AGVASQTSIYPLEVLKTRLAIRKTGQ-------YRGLLHAASVIYQKEGIRSFYRGLFPS 292
Query: 437 VIRYFPTQALNFAFKDKYKQVFL 505
++ P ++ A + K +L
Sbjct: 293 LLGIIPYAGIDLAVYETLKNFYL 315
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Frame = +2
Query: 257 SAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 421
+A +SKTA APIERVKLL+Q Q + K YKG+VD +R + +G+ SFWR
Sbjct: 20 AAIISKTAAAPIERVKLLVQNQDEMLKAGRLSSPYKGVVDCTMRTYRAEGIGSFWR 75
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/73 (31%), Positives = 41/73 (56%)
Frame = +2
Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 436
SA ++++ +P+E VK+L QV + G++ F + K +G+ +FW+GN +
Sbjct: 68 SAVLARSLTSPLEVVKVLAQV-------GTQEAKPGLIRTFASVYKREGIKAFWKGNGVS 120
Query: 437 VIRYFPTQALNFA 475
IR FP A+ +A
Sbjct: 121 CIRLFPYSAVQYA 133
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = +2
Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 436
S ++ V P E +K L VQHV+K A YKG+ A I +E+G+L+ ++G +
Sbjct: 162 STLIAMVTVYPCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKGVTPS 218
Query: 437 VIRYFP 454
+ FP
Sbjct: 219 FLGLFP 224
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 44.8 bits (101), Expect = 7e-05
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Frame = +2
Query: 281 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 460
+AP++ VK+ LQ+Q +K+ + Y+G VD V++ + +GL ++GN +R P
Sbjct: 51 IAPVDLVKIKLQMQTEAKR-STRSVYRGPVDCLVKLYRSRGLAGCFQGNTVTAVRDIPGF 109
Query: 461 ALNFA----FKDKYKQVF--LGVLTRRRSSGVTSLVIW 556
A+ F D + +F GV T + G +V W
Sbjct: 110 AVYFGVYELLCDWFSNLFGSRGVATYLMAGGFAGVVSW 147
Score = 34.3 bits (75), Expect = 0.097
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +2
Query: 254 FSAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 433
F+ VS + P + +K +Q + RYKG++D ++ KE+G++ F RG +
Sbjct: 141 FAGVVSWASTFPFDVIKSRIQADGNLGKF----RYKGMMDCALQSYKEEGMIVFTRGIWP 196
Query: 434 NVIRYFPTQALNF 472
++R F Q L F
Sbjct: 197 TLLRGF-LQVLRF 208
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/80 (27%), Positives = 40/80 (50%)
Frame = +2
Query: 263 AVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVI 442
A TAV PI+ VK +Q Q + A++ YK +D F ++ + +G + +RG ++
Sbjct: 925 ATGATAVYPIDLVKTRMQNQRAV--LEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLL 982
Query: 443 RYFPTQALNFAFKDKYKQVF 502
P +A+ D + +F
Sbjct: 983 GVSPEKAIKLTTNDFVRGIF 1002
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/48 (29%), Positives = 30/48 (62%)
Frame = +2
Query: 353 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQ 496
+Y G+ +I +++GL +++GN N++R P A+ FA +++K+
Sbjct: 590 KYSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYEEFKK 637
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = +2
Query: 338 IAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 502
I ++Y G+++AF RI +++G+ +F+RG +I P ++F + K+ F
Sbjct: 19 ITQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTYETCKKAF 73
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 38.7 bits (86), Expect = 0.005
Identities = 30/109 (27%), Positives = 48/109 (44%)
Frame = +2
Query: 365 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGVLTRRRSSGVTS 544
++ AF I + +GLL++++GN A ++R FP A+ F + Y +V + S +
Sbjct: 13 VLTAFRAIYRNEGLLAYFKGNGAMMLRTFPYGAVQFLSYEHYSKVL-----QTSSPAINK 67
Query: 545 LVIWXXXXXXXXXLCASCTPSTSHVTRLAADVGKGDGQREFSGLGNCIS 691
LV CA P +RLA V + G + CIS
Sbjct: 68 LV---AGSLAGMTACACTYPLDMVRSRLAFQVAQDQGYTTITQTIRCIS 113
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +2
Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 424
S ++ V P E +K L VQHV+K A YKG+ A I +E+G+L+ ++G
Sbjct: 431 STLIAMVTVYPCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKG 483
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 36.7 bits (81), Expect = 0.018
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 356 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 505
Y + +A R+ KE+G+L+ WRG +R A A + KQ+ L
Sbjct: 35 YTNVFNALYRMSKEEGVLTLWRGYIPTAVRAMVVNAAQLATYSQAKQLLL 84
Score = 36.7 bits (81), Expect = 0.018
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = +2
Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 436
S + A P++ K +Q + I YKG +D RI + +G+ + W+G
Sbjct: 103 SGLATTVASMPVDIAKTRIQNMRI---IDGKPEYKGTMDVLARIVRNEGVFALWKGFTPY 159
Query: 437 VIRYFPTQALNFAFKDK 487
R P L F F ++
Sbjct: 160 YFRIGPHTVLTFIFLEQ 176
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 36.3 bits (80), Expect = 0.024
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 257 SAAVSKTAVAPIERVKLLLQVQ---HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 424
S +SK + P + +K +QVQ + Q+Y G+ D F I KE+G + ++G
Sbjct: 39 SGMISKAVILPFDIIKKRIQVQGFEEARQSFGRVQQYDGVKDCFRTILKEEGAMGLFKG 97
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 35.9 bits (79), Expect = 0.032
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +2
Query: 284 APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 424
AP ERVK LLQVQ K+ RY+G+ D +++ + GL ++G
Sbjct: 179 APTERVKCLLQVQ---KESGTKARYQGLGDCLLQVYRTGGLRGVFKG 222
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 35.5 bits (78), Expect = 0.042
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 368 VDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYK 493
+DA ++IP+ +GL S WRG ++ P + F D+ K
Sbjct: 64 IDALIKIPRYEGLSSLWRGLPPTMVMAVPNTVIYFTLYDQLK 105
>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 35.1 bits (77), Expect = 0.056
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +2
Query: 386 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGVLTRRRSSGVTSL 547
+P+E L W G F++VI F A+N AF+++YK++ L ++ R+ TS+
Sbjct: 272 LPREVYLFYSWIGAFSSVINPFIYGAMNPAFREEYKKI-LRIICAGRNMERTSI 324
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 35.1 bits (77), Expect = 0.056
Identities = 20/91 (21%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Frame = +2
Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAA---------DQRYKGIVDAFVRIPKEQGLL 409
+A++++ A PI+ K+ LQ+Q S +A+ D Y+G++ V + K +G+
Sbjct: 24 AASIAEAATIPIDTAKVRLQIQGESAVMASIAQGVRTTHDAHYRGMLGTMVTLFKTEGMK 83
Query: 410 SFWRGNFANVIRYFPTQALNFAFKDKYKQVF 502
+ ++G + R ++ D+ K ++
Sbjct: 84 TMYKGLIPGIHRQLCFASIRIGLYDQVKAMY 114
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 34.7 bits (76), Expect = 0.073
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +2
Query: 287 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 466
PI+ K +QVQ + Q A +Y+ + A I + G+ ++G A ++R P
Sbjct: 221 PIDLFKSKMQVQIIRAQSGAPIQYRNVFHAGYTIAQTYGIRGCYQGLSATLVRNIPANGF 280
Query: 467 NFAFKDKYKQV 499
F F + K +
Sbjct: 281 FFGFYEFTKNL 291
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 34.3 bits (75), Expect = 0.097
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +2
Query: 242 PGWRFSAAVSKTAVA-----PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 406
P WRF + + VA P++ V+ L VQ +S + ++ Y GIV A RI E+G+
Sbjct: 28 PLWRFVSGATAGVVATASTHPLDVVRARLTVQDMSTRSISN--YTGIVSALRRIHIEEGI 85
Query: 407 LSFWRGNFANVIRYFP 454
++G +++ P
Sbjct: 86 RGLYKGLVPSLVSIAP 101
>SB_34206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +2
Query: 386 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGVLTRRRSSG 535
+P+E +L W G ++VI F A+N F+D+YK+ +L R R SG
Sbjct: 139 LPREVYVLYTWLGTLSSVINPFIYGAMNPVFRDEYKK----LLRRMRRSG 184
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 287 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQA 463
P++ VK Q + +Y G D +I G+ +F +G A ++R FPT A
Sbjct: 377 PVDMVKSCYQADGRTNSGKPQYKYNGYADCVKKIYISGGVSAFGQGLLATILRGFPTNA 435
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 424
S + P + VK+ Q + + I YK + AF +I K++G L W G
Sbjct: 124 SGVIGSAIATPTDLVKIRFQAVKIGETIP----YKNMFHAFYKIAKKEGFLGLWTG 175
Score = 29.5 bits (63), Expect = 2.8
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Frame = +2
Query: 146 AATPTSTYSPSEDHI--IEQNVEPRRSGRVR*GLPGWRFSAAVSKTAVAPIERVKLLLQV 319
AA + T P+ DH + N E R G V L + V+ +P++ V+
Sbjct: 183 AACISGTQIPTYDHTKHLLLNAELMREG-VALHLASALVAGFVATCVASPVDIVRTRFMT 241
Query: 320 QHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 445
Q + Y+G +D + + +G+L+ ++G F N R
Sbjct: 242 QPKDTK-GRPLVYQGTLDCIYKTVRHEGILALYKGFFPNWTR 282
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = +2
Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 436
S + A P++ +K+ LQ + K +KG +D F++ + +GL ++G +
Sbjct: 30 SGMLGCAAGQPLDLLKVRLQAMNQVKP-GETAPFKGAMDCFMKTVRLEGLRGLYKGMLSP 88
Query: 437 VIRYFPTQALNF 472
++ P+ AL F
Sbjct: 89 LLMATPSTALTF 100
>SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28)
Length = 343
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 386 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGVLTRRRSSGV 538
+P+E L + G ++VI F A+N F+++YK+VF R R+S V
Sbjct: 263 LPRELYFLYTYVGVLSSVINPFIYGAMNPMFREEYKKVFRIATFRGRNSAV 313
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 31.1 bits (67), Expect = 0.90
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +2
Query: 269 SKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRY 448
+ AV P++ +K LQ+ + + + Y GI+D +I +GL +F++G +I
Sbjct: 219 ASVAVNPLDVIKTRLQLLNRPQ---GEPNYNGIIDCAKKIYSNEGLAAFYKGAVPRMIVI 275
Query: 449 FP 454
P
Sbjct: 276 AP 277
>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
Length = 553
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 269 SKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 427
S+ VA ER +L+ Q Q +D RY+G +D+F + +G L +RG+
Sbjct: 278 SRQTVACPERCGVLMASQGKRGQYMSDARYRGHLDSFRGDARYRGHLDSFRGD 330
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 281 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 454
+ P++RVK +LQ++ + Y G VD RI +E G+ ++G +R P
Sbjct: 155 LTPLDRVKCILQIE----KAFGGSSYGGPVDCLRRIYREAGVRGVYKGISVTAMRDIP 208
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +2
Query: 287 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 466
P++ +K+ LQ + K YK D F +I + +G+ +RG ++ P +
Sbjct: 58 PLDTIKVRLQAMPLPKP-GEPWMYKNSFDCFFKIIRNEGVYYLFRGVTVPILNSIPNTTV 116
Query: 467 NFA 475
F+
Sbjct: 117 LFS 119
>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 281 VAPIERVKLLLQVQHVSKQIAADQRYK-GIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 454
+ P E +K LQ QH + I+ K G++D ++I + G +RG A R P
Sbjct: 124 LCPAELIKCRLQAQHQTNLISGMAGPKSGVIDVTMQIIRNDGFQGLFRGMTATWAREVP 182
>SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 307 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 408
A+ S RQQ R RP +GY +R R YP+ SP
Sbjct: 83 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 117
>SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 307 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 408
A+ S RQQ R RP +GY +R R YP+ SP
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 217
>SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 404
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 307 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 408
A+ S RQQ R RP +GY +R R YP+ SP
Sbjct: 261 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 295
>SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012)
Length = 550
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 307 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 408
A+ S RQQ R RP GY +R R YP+ SP
Sbjct: 84 ASGSNQRQQQARGRPQASGYNQRSRRGYPRARASP 118
>SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039)
Length = 54
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 362 GIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 499
G+V + G +RGN A ++R P ++ F ++YK++
Sbjct: 1 GVVHVLTQTYTTNGFTGLFRGNSATMMRVVPYASIQFTSHEQYKKL 46
>SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 866
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 389 PKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGV 511
P+E L W G ++VI F +N F++++K+++L V
Sbjct: 815 PRELYLFYSWLGALSSVINPFIYGVMNPMFREEFKRIYLRV 855
>SB_27874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 613 RSRGGTRSTERWLRRHHRRPDYQRSNARTAS-SC 515
RS+ +R++ RWL R R+P S+ R++S SC
Sbjct: 13 RSQVRSRNSNRWLLRQQRQPQRHLSHKRSSSNSC 46
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 278 AVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 457
A+ PIE +K LQ+ Y+G++ + KE+G+ +F+R + P
Sbjct: 14 AMNPIEVIKQRLQMY--------GSPYRGVIHCATSVFKEEGIRAFYRSYTTQLSMNIPF 65
Query: 458 QALNF 472
Q L+F
Sbjct: 66 QTLHF 70
>SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06)
Length = 456
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +1
Query: 226 RSLRTSWLAVLRCRLQDRRSTHRACQAAAPS 318
R+ R SWL RC D RS+ R Q AAPS
Sbjct: 404 RAPRNSWLRSCRCHWCDNRSSPR--QTAAPS 432
>SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 406
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 307 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 408
A+ S RQQ R RP +GY +R R YP+ +P
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARATP 217
>SB_45532| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-40)
Length = 368
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 386 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGVLTRRRSSG 535
+P+E +L + G ++VI F A+N FK++YK++ T R G
Sbjct: 267 LPREVYVLYSFLGGLSSVINPFIYGAMNPIFKEQYKKILRPRCTGRIVEG 316
>SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)
Length = 965
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 253 PPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 128
PP R +A + + FD+ + I TR RGG ++ WG+
Sbjct: 541 PPDRTEVAPSFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 581
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 287 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 466
P E VK LQ+ + AA Y+G +D + K G+L +RG + + P ++
Sbjct: 60 PTEYVKTQLQLD----EKAAKPIYRGPIDCVKKTVKGHGVLGLYRGLSSLLYGSVPKASV 115
Query: 467 NFA 475
FA
Sbjct: 116 RFA 118
>SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 676
Score = 27.9 bits (59), Expect = 8.4
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +2
Query: 113 ELVFRDPPSA----CAATPTSTYSPSEDHIIEQNVEPRRSGRVR*GLPGWRFSAAVSKTA 280
E + RDP + A+P S I EQNVE S + G+ G + T
Sbjct: 269 EALTRDPKESDTNVSRASPDSHLQTVISEIREQNVELVESSPIEAGVDGETPAPDEKSTD 328
Query: 281 VAPIERVKLLLQVQHVSK-QIA 343
VAPI V LQ + ++ QIA
Sbjct: 329 VAPISEVADALQEKEENEPQIA 350
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,654,299
Number of Sequences: 59808
Number of extensions: 457485
Number of successful extensions: 1540
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1531
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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