Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20578
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   190   1e-50
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   190   1e-50
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  190 bits (463), Expect = 1e-50
 Identities = 95/151 (62%), Positives = 113/151 (74%), Gaps = 2/151 (1%)
 Frame = +2

Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 436
           +AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN AN
Sbjct: 20  AAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLAN 79

Query: 437 VIRYFPTQALNFAFKDKYKQVFLGVLTRRRSSGVTSLVIWXXXXXXXXXLCASC--TPST 610
           VIRYFPTQALNFAFKDKYKQVFLG +   +++      +            + C   P  
Sbjct: 80  VIRYFPTQALNFAFKDKYKQVFLGGVD--KNTQFLRYFVGNLASGGAAGATSLCFVYPLD 137

Query: 611 SHVTRLAADVGKGDGQREFSGLGNCISKIFK 703
              TRLAADVGK  G+REF+GLGNC++KIFK
Sbjct: 138 FARTRLAADVGKAGGEREFTGLGNCLTKIFK 168



 Score = 44.8 bits (101), Expect = 8e-07
 Identities = 21/35 (60%), Positives = 21/35 (60%)
 Frame = +1

Query: 511 VDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFA 615
           VDK TQF RYF            TSLCFVYPLDFA
Sbjct: 105 VDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFA 139



 Score = 38.3 bits (85), Expect = 7e-05
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +3

Query: 201 MSNLADPVAFAKDFLAGG 254
           MS LADPVAFAKDFLAGG
Sbjct: 1   MSGLADPVAFAKDFLAGG 18



 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +2

Query: 287 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 445
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 22.2 bits (45), Expect = 4.9
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = +2

Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 436
           + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+   +RG   +
Sbjct: 125 AGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLYRGFGVS 182

Query: 437 VIRYFPTQALNFAFKD 484
           V      +A  F F D
Sbjct: 183 VQGIIIYRAAYFGFYD 198


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  190 bits (463), Expect = 1e-50
 Identities = 95/151 (62%), Positives = 113/151 (74%), Gaps = 2/151 (1%)
 Frame = +2

Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 436
           +AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN AN
Sbjct: 20  AAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLAN 79

Query: 437 VIRYFPTQALNFAFKDKYKQVFLGVLTRRRSSGVTSLVIWXXXXXXXXXLCASC--TPST 610
           VIRYFPTQALNFAFKDKYKQVFLG +   +++      +            + C   P  
Sbjct: 80  VIRYFPTQALNFAFKDKYKQVFLGGVD--KNTQFLRYFVGNLASGGAAGATSLCFVYPLD 137

Query: 611 SHVTRLAADVGKGDGQREFSGLGNCISKIFK 703
              TRLAADVGK  G+REF+GLGNC++KIFK
Sbjct: 138 FARTRLAADVGKAGGEREFTGLGNCLTKIFK 168



 Score = 44.8 bits (101), Expect = 8e-07
 Identities = 21/35 (60%), Positives = 21/35 (60%)
 Frame = +1

Query: 511 VDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFA 615
           VDK TQF RYF            TSLCFVYPLDFA
Sbjct: 105 VDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFA 139



 Score = 38.3 bits (85), Expect = 7e-05
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +3

Query: 201 MSNLADPVAFAKDFLAGG 254
           MS LADPVAFAKDFLAGG
Sbjct: 1   MSGLADPVAFAKDFLAGG 18



 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +2

Query: 287 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 445
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 22.2 bits (45), Expect = 4.9
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = +2

Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 436
           + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+   +RG   +
Sbjct: 125 AGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLYRGFGVS 182

Query: 437 VIRYFPTQALNFAFKD 484
           V      +A  F F D
Sbjct: 183 VQGIIIYRAAYFGFYD 198


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 593 SCTPSTSHVTRLAAD 637
           SC PS  HV + A D
Sbjct: 158 SCVPSVKHVAKCATD 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,905
Number of Sequences: 438
Number of extensions: 3850
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)