Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20576
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 91 2e-19
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc... 27 2.0
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.7
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 27 2.7
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 3.5
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 26 4.7
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 6.2
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce... 26 6.2
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 25 8.2
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch... 25 8.2
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma... 25 8.2
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 90.6 bits (215), Expect = 2e-19
Identities = 42/69 (60%), Positives = 46/69 (66%)
Frame = +1
Query: 505 QVTGIGVDTHVHRICNRIGWVKKPTKTPEETRLALQSWLPFEQWSEVNPLLVGFGQTICQ 684
+ GIGVD HVHRICN + W TKT E+TR ALQSWLP E W E+N LVGFGQTIC
Sbjct: 154 KTVGIGVDVHVHRICNLLHWCN--TKTEEQTRAALQSWLPKELWFELNHTLVGFGQTICL 211
Query: 685 PIKPNCGEC 711
P C C
Sbjct: 212 PRGRRCDMC 220
Score = 84.2 bits (199), Expect = 2e-17
Identities = 39/91 (42%), Positives = 60/91 (65%)
Frame = +2
Query: 242 GPS*LTAMQRLRARGLTVDNVLSMSDEELGQLIYPVGFWKTKVKYIKKTTGILKEQYNGD 421
GP+ ++L A GL ++++ ++ + L +LI VGF K Y+K+ IL E++ GD
Sbjct: 67 GPTMRNLKEKL-AGGLCLEDIQNIDEVSLNKLIEKVGFHNRKTIYLKQMARILSEKFQGD 125
Query: 422 IPDSVEKLCKLNGVGPKMAHICMKVAWNKSL 514
IPD+VE L L GVGPKM ++CM +AWNK++
Sbjct: 126 IPDTVEDLMTLPGVGPKMGYLCMSIAWNKTV 156
Score = 31.1 bits (67), Expect = 0.16
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 195 YRYQCLVSLMLSSQTKDQV 251
+R+Q LV+LMLSSQTKD V
Sbjct: 47 FRFQTLVALMLSSQTKDIV 65
>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +2
Query: 290 TVDNVLSMSDEELGQLIYPV----GFWKTKVKYIKKTTGILKEQYNGDIPDSVEKLCK-L 454
T+ + S ++ E + P+ GF+ T+ K + + L + + +IP + ++ K +
Sbjct: 90 TLPTLKSCAEAEYNTQVMPLWSGMGFY-TRCKRLHQACQHLAKLHPSEIPRTGDEWAKGI 148
Query: 455 NGVGPKMAHICMKVAWNK 508
GVGP A + +AW +
Sbjct: 149 PGVGPYTAGAVLSIAWKQ 166
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 437 EKLCKLNGVGPKMAHICMKVAWNKSLESVLTHMYIGYAIGL 559
+KL LNG+G + IC + +S+++++ + I L
Sbjct: 527 QKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISL 567
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 5/26 (19%)
Frame = -2
Query: 489 IQICAILGPTPFS-----LHNFSTES 427
++ C +LG TPFS +HNF+T S
Sbjct: 573 VRFCKLLGSTPFSERDLIVHNFNTSS 598
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 425 PDSVEKLCKLNGVGPKM 475
PD ++KLC L GV P++
Sbjct: 362 PDEIDKLCHLLGVSPEL 378
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = -3
Query: 572 FLTHPILLHILCTCVSTPIPVTCSKQPSYKYVPF*DQHHSVCTTFR 435
F+ H + H P P+ C Q S + F H+ + T +R
Sbjct: 77 FINHCAISHTRWATHGIPSPINCHPQRSDPHSEFIVVHNGILTNYR 122
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -3
Query: 209 ALISVHLLKVSKYINLDVCGCGYYCSHIFII 117
+L SV LK + Y N C CGY S II
Sbjct: 1265 SLRSVKSLKETLYANTVECDCGYEYSDFTII 1295
>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 6.2
Identities = 27/112 (24%), Positives = 44/112 (39%)
Frame = +2
Query: 188 IGVQISMLSFSDAIKPNQGPS*LTAMQRLRARGLTVDNVLSMSDEELGQLIYPVGFWKTK 367
I VQ++ LS++D ++ N LT+ + N L +S E ++ Y + K
Sbjct: 200 IQVQLAQLSYNDQVEWN-----LTSPLTPEEFSVLTCNDLGLSGESRPEIAYAIHECLLK 254
Query: 368 VKYIKKTTGILKEQYNGDIPDSVEKLCKLNGVGPKMAHICMKVAWNKSLESV 523
+K K GD+PD GP+ + W LE+V
Sbjct: 255 LK---------KNACEGDLPDYDSDAVPGTKAGPRQDMDTLGALWQPVLETV 297
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +1
Query: 505 QVTGIGVDTHVHRICNRIGWVKKPTKTPEETRLALQSWLP 624
QV G+DT + N W+ P +L + WLP
Sbjct: 229 QVIAYGIDTAFEHVHNGWRWMVGLAMVPAAFQLFILIWLP 268
>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
Crs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 229
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 273 SLCIAVS*LGPWFGLIASEKLSIDICTPIKSFKIYKFGCVWLWILLLTHF 124
+LCIA+S L F ++ P SFKIY GC+++ L + +
Sbjct: 106 TLCIAISLLDRCF--------TVKPTIPTTSFKIYAIGCLFIAFKLTSDY 147
>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 8.2
Identities = 21/80 (26%), Positives = 33/80 (41%)
Frame = -3
Query: 665 NPTSRGLTSLHCSKGNQLCRARRVSSGVLVGFLTHPILLHILCTCVSTPIPVTCSKQPSY 486
+P RG++ + + +SG + L HPILL S P T +K S
Sbjct: 148 SPKRRGISLMSIDANKLSPKKTSPNSGYITSPLRHPILL-------SETEPGTPTKNDSP 200
Query: 485 KYVPF*DQHHSVCTTFRLNR 426
Y+ Q +S+ T N+
Sbjct: 201 AYIGLPSQPNSITTLNNTNQ 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,115
Number of Sequences: 5004
Number of extensions: 64117
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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