Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20576
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0030 + 9089087-9089207,9090406-9090533,9090897-9090954,909... 103 2e-22
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 42 5e-04
06_01_0930 - 7181514-7181756,7181847-7181903,7182656-7182859,718... 40 0.003
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 37 0.018
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 36 0.024
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421... 35 0.056
04_03_0558 + 17111138-17111996,17112474-17112564,17112647-171132... 32 0.40
02_04_0199 - 20861793-20862023,20862588-20862798,20863260-208641... 31 0.69
06_03_1073 - 27373259-27373304,27373542-27373624,27373719-273743... 29 3.7
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 29 3.7
>11_03_0030 +
9089087-9089207,9090406-9090533,9090897-9090954,
9091055-9091096,9091678-9091796,9092187-9092253,
9092616-9092707,9092966-9093025,9093026-9093163,
9093242-9093346,9093450-9093533,9093699-9093823,
9094160-9094202
Length = 393
Score = 103 bits (246), Expect = 2e-22
Identities = 43/71 (60%), Positives = 54/71 (76%), Gaps = 5/71 (7%)
Frame = +1
Query: 514 GIGVDTHVHRICNRIGWV-----KKPTKTPEETRLALQSWLPFEQWSEVNPLLVGFGQTI 678
GI VDTHVHRI NR+GWV K+ T TPE+TR++L+ WLP ++W +NPLLVGFGQTI
Sbjct: 286 GICVDTHVHRISNRLGWVFREGTKQKTTTPEQTRMSLEKWLPKDEWEPINPLLVGFGQTI 345
Query: 679 CQPIKPNCGEC 711
C P++P C C
Sbjct: 346 CTPLRPKCDMC 356
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Frame = +2
Query: 335 LIYPVGFWKTKVKYIKKTTGILKEQYNGDIPDSVEKLCKLNGVGPKMAHICMKVAW-NKS 511
L VGF++ K K+IK+ + I E++ GDIPDS+ +L L GVGPKMAH+ M +AW N
Sbjct: 226 LFNQVGFYQRKAKFIKEASKICLERFGGDIPDSLNELLALKGVGPKMAHLVMSIAWKNTQ 285
Query: 512 LESVLTHMY 538
V TH++
Sbjct: 286 GICVDTHVH 294
>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 41.9 bits (94), Expect = 5e-04
Identities = 24/63 (38%), Positives = 33/63 (52%)
Frame = +1
Query: 523 VDTHVHRICNRIGWVKKPTKTPEETRLALQSWLPFEQWSEVNPLLVGFGQTICQPIKPNC 702
VDT+V RIC R+GWV PE +L L + E++ ++ FG+ C KPNC
Sbjct: 1442 VDTNVGRICVRLGWV-PIQPLPESLQLHLL------ELYELHYQMITFGKVFCTKSKPNC 1494
Query: 703 GEC 711
C
Sbjct: 1495 NAC 1497
>06_01_0930 -
7181514-7181756,7181847-7181903,7182656-7182859,
7182937-7183266
Length = 277
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/61 (40%), Positives = 32/61 (52%)
Frame = +1
Query: 523 VDTHVHRICNRIGWVKKPTKTPEETRLALQSWLPFEQWSEVNPLLVGFGQTICQPIKPNC 702
VDTHV RI N IGWV T + E L L S +P + ++N L V G+ +CQ
Sbjct: 194 VDTHVLRITNAIGWV-PATASRERAYLHLNSKIPDDLKFDLNCLFVTHGK-LCQSCSKKL 251
Query: 703 G 705
G
Sbjct: 252 G 252
>02_03_0300 + 17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 36.7 bits (81), Expect = 0.018
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 17/80 (21%)
Frame = +1
Query: 523 VDTHVHRICNRIGWVKKPTKTPEETRLALQSWLPFEQ------WS-----------EVNP 651
VDT+V RIC R+GWV PE +L L P + W E++
Sbjct: 1307 VDTNVARICVRLGWVPL-QPLPESLQLHLLELYPLLEHIQKYIWPRLCKLDQLILYELHY 1365
Query: 652 LLVGFGQTICQPIKPNCGEC 711
++ FG+ C KPNC C
Sbjct: 1366 QMITFGKVFCSKSKPNCNSC 1385
>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 36.3 bits (80), Expect = 0.024
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 17/80 (21%)
Frame = +1
Query: 523 VDTHVHRICNRIGWVKKPTKTPEETRLALQSWLPFEQ------WS-----------EVNP 651
VDT+V RIC R+GWV PE +L L P + W E++
Sbjct: 1514 VDTNVGRICVRLGWVPL-QPLPESLQLHLLEMYPMLENIQKYLWPRLCKLDQRTLYELHY 1572
Query: 652 LLVGFGQTICQPIKPNCGEC 711
++ FG+ C KPNC C
Sbjct: 1573 QMITFGKVFCTKSKPNCNAC 1592
>05_05_0034 - 21741148-21741275,21741890-21741928,21742007-21742121,
21742227-21742292,21743213-21743371,21743573-21743609,
21743757-21744194,21744735-21744817,21744920-21744956,
21745146-21745214,21745316-21745407,21745481-21745565,
21745903-21745982,21746327-21746724,21746813-21747717,
21747825-21747915,21748617-21750680,21750681-21750749,
21750850-21751273,21751644-21751763
Length = 1832
Score = 35.1 bits (77), Expect = 0.056
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 17/80 (21%)
Frame = +1
Query: 523 VDTHVHRICNRIGWVKKPTKTPEETRLALQSWLPFEQ------WS-----------EVNP 651
VDT+V RIC R+GWV PE +L L P + W E++
Sbjct: 1413 VDTNVGRICVRLGWV-PIQPLPESLQLHLLELYPVLETIQKYLWPRLCKLDQQTLYELHY 1471
Query: 652 LLVGFGQTICQPIKPNCGEC 711
++ FG+ C KPNC C
Sbjct: 1472 QMITFGKVFCTKSKPNCNAC 1491
>04_03_0558 +
17111138-17111996,17112474-17112564,17112647-17113268,
17113378-17113457,17113871-17113937,17114138-17114263,
17114333-17114415,17115334-17115777,17115834-17115927,
17116038-17116124,17116474-17116594,17116671-17116709,
17116828-17116997
Length = 960
Score = 32.3 bits (70), Expect = 0.40
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 640 EVNPLLVGFGQTICQPIKPNCGEC 711
E++ ++ FG+ IC+ KPNCG C
Sbjct: 605 ELHCQMITFGKAICRKSKPNCGAC 628
>02_04_0199 -
20861793-20862023,20862588-20862798,20863260-20864142,
20864363-20865608
Length = 856
Score = 31.5 bits (68), Expect = 0.69
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 11/74 (14%)
Frame = +2
Query: 290 TVDNVLSMSDEELGQLIYPVGFWKTKVKYIKKTTGILKEQYNG-----------DIPDSV 436
T++ + +S++EL GF + KYI T IL+ + G ++P+ +
Sbjct: 690 TIERLARVSEQELRD----AGFGY-RAKYIVGTAKILQAKPGGGEKWLASLRTRELPEVI 744
Query: 437 EKLCKLNGVGPKMA 478
E LC L GVGPK+A
Sbjct: 745 EALCTLPGVGPKVA 758
>06_03_1073 -
27373259-27373304,27373542-27373624,27373719-27374397,
27374493-27374563,27374635-27374727,27375855-27375928,
27376016-27376073,27376212-27376349
Length = 413
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 501 QATFIQICAILGPTPFSLHNFSTESGMSPLYCSFRIP 391
+A F+++C L TP LHN S + M +IP
Sbjct: 90 EANFLKLCGTLFETPAELHNISYQINMESYIEHDKIP 126
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 629 SKGNQLCRARRVSSGVLVGFLTHPILLHIL-CTCVSTPIPVTCSKQPSYKYVPF 471
S GN+ + +G+++GF T +LL I+ C C S K+P + ++P+
Sbjct: 1246 SNGNRPGPEAAIIAGMVIGFFTFALLLAIVACVCCSKK-----KKRPPHMHMPY 1294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,503,067
Number of Sequences: 37544
Number of extensions: 380429
Number of successful extensions: 908
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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