Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20576
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5946| Best HMM Match : HhH-GPD (HMM E-Value=2e-05)                 132   2e-31
SB_59587| Best HMM Match : HhH-GPD (HMM E-Value=1e-09)                 33   0.23 
SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)                   28   8.7  
SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)                   28   8.7  
SB_33341| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_22001| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_5946| Best HMM Match : HhH-GPD (HMM E-Value=2e-05)
          Length = 175

 Score =  132 bits (320), Expect = 2e-31
 Identities = 54/71 (76%), Positives = 63/71 (88%)
 Frame = +1

Query: 505 QVTGIGVDTHVHRICNRIGWVKKPTKTPEETRLALQSWLPFEQWSEVNPLLVGFGQTICQ 684
           Q+TGIGVDTHVHRICNR+GW KKPTKTPEE+RLA+++WLP E+WSE+N LLVGFGQ IC 
Sbjct: 82  QLTGIGVDTHVHRICNRLGWTKKPTKTPEESRLAVEAWLPREEWSELNVLLVGFGQQICL 141

Query: 685 PIKPNCGECLN 717
           P+ PNC  CLN
Sbjct: 142 PVGPNCQSCLN 152



 Score =  119 bits (286), Expect = 3e-27
 Identities = 50/82 (60%), Positives = 65/82 (79%)
 Frame = +2

Query: 263 MQRLRARGLTVDNVLSMSDEELGQLIYPVGFWKTKVKYIKKTTGILKEQYNGDIPDSVEK 442
           M++L+A G TVD +L+ SD++LG++IYPVGFW+ KV YIKK T I K QY GDIP ++ +
Sbjct: 1   MEKLKAHGCTVDKILNTSDDKLGEMIYPVGFWRKKVDYIKKATNICKAQYQGDIPCTISE 60

Query: 443 LCKLNGVGPKMAHICMKVAWNK 508
           L +L GVGPKMAHICM VAW +
Sbjct: 61  LVELPGVGPKMAHICMSVAWGQ 82


>SB_59587| Best HMM Match : HhH-GPD (HMM E-Value=1e-09)
          Length = 300

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = +1

Query: 505 QVTGIGVDTHVHRICNR---IGWVKKPTKTPEETRLALQSWLPFEQWSEVNPLLVGFGQT 675
           + TG+ VD +V R+ +R   IG       T +         +P ++  + N  ++ FG T
Sbjct: 144 EATGV-VDGNVIRVLSRLRRIGADMTSNTTMDHFWSLAHRLVPNDRPGDFNQAMMEFGAT 202

Query: 676 ICQPIKPNCGECL 714
           +C P  P C +C+
Sbjct: 203 LCTPKTPQCSKCV 215


>SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
 Frame = +2

Query: 302 VLSMSDEELGQLIYPVGFWKTKVKYIKKTTGILKEQYNGD---------IPDSVEKLCKL 454
           V S++D ++ Q +  +GF   + K+I K+  ++ E    D           D+   LCKL
Sbjct: 338 VSSLADPKVEQDLRSMGFGY-RAKFINKSAQLIIEYGGQDWLLSLRKQSYQDAHSALCKL 396

Query: 455 NGVGPKMAH-ICMKVAWNKSLESVLTHMY 538
            G+G K+A  +C+      S   V TH++
Sbjct: 397 PGIGSKVADCVCLMSLDKHSAIPVDTHVW 425


>SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)
          Length = 1188

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 22/66 (33%), Positives = 31/66 (46%)
 Frame = +2

Query: 257 TAMQRLRARGLTVDNVLSMSDEELGQLIYPVGFWKTKVKYIKKTTGILKEQYNGDIPDSV 436
           T+M      GL +DN +  + EE G  IY    W+T V      +G L   Y  D+P  +
Sbjct: 71  TSMAVAGITGLFLDNAIPGTPEERG--IYR---WRTIVTQEGDESGSLASIYIYDLPFGL 125

Query: 437 EKLCKL 454
            +L KL
Sbjct: 126 NRLSKL 131


>SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)
          Length = 671

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 392 GILKEQYNGDIPDSVEKLCKLNGVGPKMAHICMKVA 499
           G+LKE ++G IPD+VE L K++   P    + + +A
Sbjct: 6   GVLKEFWDGIIPDTVEAL-KVDSRFPATPSVSVSIA 40


>SB_33341| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 22/105 (20%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
 Frame = +2

Query: 230 KPNQGPS*LTAMQRLRARGLTVDNVL----SMSDEELGQLIYPVGFWKTKVKYIKKTTGI 397
           +P   P+ +  +++L+A GL VD +L     M D+   + +  V       ++ ++   I
Sbjct: 104 QPEYSPN-IKKVKKLKAHGLFVDPILHDYWDMIDQHATEELVVVQCGNLGKRFARQD--I 160

Query: 398 LKEQYNGDIPDSVEKLC-KLNGVGPKMAHICMKVAWNKSLESVLT 529
           +K      + + + ++  K+NG+ P    +C+    + S+  +LT
Sbjct: 161 IKASVGKFLDEIITRMNDKINGISPAQHKMCLYSVHDTSISCLLT 205


>SB_22001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -3

Query: 650 GLTS---LHCSKGNQLCRARRVSSGVLVGFLTHPILL 549
           GLTS   LHC   N+  R +   S +L+G L+   +L
Sbjct: 28  GLTSQPALHCENDNKSSRCQSCDSRILIGLLSQSFVL 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,077,250
Number of Sequences: 59808
Number of extensions: 466179
Number of successful extensions: 1067
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)