Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20576
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50874-11|CAA90766.1|  259|Caenorhabditis elegans Hypothetical p...    97   1e-20
Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical pr...    32   0.47 
AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interfere...    32   0.47 
Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z70750-2|CAA94737.1|  756|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AL033510-6|CAA22062.1|  343|Caenorhabditis elegans Hypothetical ...    28   7.7  
AF000262-3|AAK21363.1|  118|Caenorhabditis elegans Saposin-like ...    28   7.7  

>Z50874-11|CAA90766.1|  259|Caenorhabditis elegans Hypothetical
           protein R10E4.5 protein.
          Length = 259

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 41/70 (58%), Positives = 51/70 (72%)
 Frame = +1

Query: 505 QVTGIGVDTHVHRICNRIGWVKKPTKTPEETRLALQSWLPFEQWSEVNPLLVGFGQTICQ 684
           +  GI VDTHVHRI NR+GW+K  T TPE+T+ AL+  LP  +W  +N LLVGFGQ  CQ
Sbjct: 131 ECVGIAVDTHVHRISNRLGWIK--TSTPEKTQKALEILLPKSEWQPINHLLVGFGQMQCQ 188

Query: 685 PIKPNCGECL 714
           P++P CG CL
Sbjct: 189 PVRPKCGTCL 198



 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 42/94 (44%), Positives = 67/94 (71%), Gaps = 1/94 (1%)
 Frame = +2

Query: 260 AMQRLRARGLTVDNVLSMSDEELGQLIYPVGFWKTKVKYIKKTTGILKEQYNGDIPDSVE 439
           AM+RL+  GL++  +L     +L  ++ PVGF+K K  Y++KT  ILK+ ++GDIPDS++
Sbjct: 49  AMKRLKDHGLSIGKILEFKVPDLETILCPVGFYKRKAVYLQKTAKILKDDFSGDIPDSLD 108

Query: 440 KLCKLNGVGPKMAHICMKVAWNKSLE-SVLTHMY 538
            LC L GVGPKMA++ M++AW + +  +V TH++
Sbjct: 109 GLCALPGVGPKMANLVMQIAWGECVGIAVDTHVH 142



 Score = 35.5 bits (78), Expect = 0.038
 Identities = 15/21 (71%), Positives = 20/21 (95%)
 Frame = +3

Query: 192 VYRYQCLVSLMLSSQTKDQVN 254
           V+R+Q LV+LMLSSQT+D+VN
Sbjct: 26  VHRFQVLVALMLSSQTRDEVN 46


>Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical
           protein K08H10.7 protein.
          Length = 1020

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 353 FWKTKVKYIKKTTGILKEQYNGDIPDSVEKLCKLNGVGPKM 475
           FW+  +++ KK T  + E Y  D  D+V  +C+LN V  KM
Sbjct: 93  FWQ-HLRHEKKQTDFILEDYVFDEKDTVYSVCRLNTVTSKM 132


>AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interference
           promoting factorRDE-1 protein.
          Length = 1020

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 353 FWKTKVKYIKKTTGILKEQYNGDIPDSVEKLCKLNGVGPKM 475
           FW+  +++ KK T  + E Y  D  D+V  +C+LN V  KM
Sbjct: 93  FWQ-HLRHEKKQTDFILEDYVFDEKDTVYSVCRLNTVTSKM 132


>Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical
           protein F54B11.6 protein.
          Length = 183

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +1

Query: 358 EDKSKIHKKNNRNSKRAVQWRHPRFSRKVVQTEWCWS*NGTYLYEGC 498
           E+  K H +N +     +  +H R      + +WCW  N   +Y  C
Sbjct: 91  EELEKKHAENLKEEIEKLSEKHQRELAVAKKKQWCWQCNSEAIYHCC 137


>Z70750-2|CAA94737.1|  756|Caenorhabditis elegans Hypothetical
           protein C50F4.2 protein.
          Length = 756

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 496 CLEQVTGIGVDTHVHRICNRI 558
           C+E    IG DT +HRIC  I
Sbjct: 162 CIESDKSIGSDTALHRICEAI 182


>AL033510-6|CAA22062.1|  343|Caenorhabditis elegans Hypothetical
           protein Y40H7A.10 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 341 YPVGFWKTKVKYIKKTTGILKEQYNGDIPDSVEKLCKLNGVGPKMAHICMKVAWNKS 511
           YP  FW TK +    T   +      +  D + ++  LN  GP +  +C   A NK+
Sbjct: 223 YPYYFWTTKCRETVPTVARISSWMKAESEDEMAQIVALN--GPMI--VCANFATNKN 275


>AF000262-3|AAK21363.1|  118|Caenorhabditis elegans Saposin-like
           protein family protein15 protein.
          Length = 118

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +2

Query: 368 VKYIKKTTGILKEQYNGDIPDSVEKLCKLNGVGPKMAHICMKVAWNKSLESVLTHM 535
           V  +K+   +L  ++ GDI  +V+K CK   V   M  +C KV   K+LE ++  +
Sbjct: 38  VNVVKQLDQVL--EHGGDIEAAVDKFCK-EDVPSFMVDMCEKVI-EKNLEYIINKL 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,702,041
Number of Sequences: 27780
Number of extensions: 367715
Number of successful extensions: 917
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)