Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20576
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              24   1.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.8  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 569 LTHPILLHILCTCVSTPIPVTCSKQPSY 486
           + + ILL +L TC+     V C  +PS+
Sbjct: 1   MKYSILLSLLITCLICSPSVHCGTRPSF 28


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 5/14 (35%), Positives = 13/14 (92%)
 Frame = +2

Query: 482 ICMKVAWNKSLESV 523
           IC+++ W+K++E++
Sbjct: 331 ICVQIPWDKNVEAL 344


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 541 RICNRIGWVKK 573
           R+CNR+G VK+
Sbjct: 249 RLCNRLGRVKR 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,047
Number of Sequences: 438
Number of extensions: 4428
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)