Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20575
         (719 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IDN9 Cluster: Putative uncharacterized protein PF13_0...    39   0.11 
UniRef50_P32908 Cluster: Structural maintenance of chromosomes p...    34   3.1  
UniRef50_Q8IIN2 Cluster: Putative uncharacterized protein; n=1; ...    34   4.1  
UniRef50_Q4XMD0 Cluster: Putative uncharacterized protein; n=3; ...    34   4.1  
UniRef50_A0Z8S6 Cluster: Putative glycosyl transferase WbiF; n=1...    33   9.4  

>UniRef50_Q8IDN9 Cluster: Putative uncharacterized protein
           PF13_0243; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PF13_0243 - Plasmodium
           falciparum (isolate 3D7)
          Length = 994

 Score = 39.1 bits (87), Expect = 0.11
 Identities = 22/64 (34%), Positives = 33/64 (51%)
 Frame = +2

Query: 419 TMYFVNWIDHTFEVLSKLSEVVYKNDYKENLGCVSSGNLNCCRY*AIFILQLMSYCYLL* 598
           T YF+NW   +F + + L+ V+Y+N  K  LG +S  N N  +   I I+    Y  LL 
Sbjct: 199 TNYFINWNKISFRMYASLNSVMYRNIRKRKLGSISDLNYN-MKNPLICIMNNFLYFLLLS 257

Query: 599 RFAN 610
            + N
Sbjct: 258 EYLN 261


>UniRef50_P32908 Cluster: Structural maintenance of chromosomes
           protein 1; n=4; Saccharomycetaceae|Rep: Structural
           maintenance of chromosomes protein 1 - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 1225

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 28/77 (36%), Positives = 38/77 (49%)
 Frame = +3

Query: 51  KFELPDNSAESTKYLITLLIKEIHPSIGEIRKKLQVKHIEEQELIKIREVIALCCNQIKK 230
           K  L +N  E  KY   L+ KEI P I E++KKL      +  L+K +E +    N I K
Sbjct: 735 KRSLDENRLE-IKYHNDLIEKEIQPKITELKKKLDDLENTKDNLVKEKEALQ---NNIFK 790

Query: 231 CVVNLLGISS*STIKEY 281
              + +G     TIKEY
Sbjct: 791 EFTSKIGF----TIKEY 803


>UniRef50_Q8IIN2 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 5922

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
 Frame = +3

Query: 18   FRNNELIMHKIKFELPDNSAESTKYLITLLI---KEIHPSIGEIRKKLQVKHIEEQELIK 188
            F  N + ++ +K ++ DN+ ++  Y I  +I   K  +  + EI K L++KH + QE ++
Sbjct: 1302 FVYNIIKLYILKNKIYDNTYDAYLYSIEEIIFKYKLYNQKLFEILKHLKIKHEDNQEYME 1361

Query: 189  IREVIAL 209
            + E+I+L
Sbjct: 1362 VLEIISL 1368


>UniRef50_Q4XMD0 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 787

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 148 FFRISPILGCISLIKSVIKYFVDSAELSGSSNFILCIISSLFLNSFYI 5
           F+ I+ I GCI L+ S+IKY +   + S SS     ++  + +  F +
Sbjct: 429 FYNIAKIKGCIKLLISIIKYLITKVDTSHSSEIHQFLLLFILIPHFQL 476


>UniRef50_A0Z8S6 Cluster: Putative glycosyl transferase WbiF; n=1;
           marine gamma proteobacterium HTCC2080|Rep: Putative
           glycosyl transferase WbiF - marine gamma proteobacterium
           HTCC2080
          Length = 279

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -1

Query: 365 FQDVGLLYLICLCTIPISLRDIGGFPEEIFL 273
           FQDV LL   C+     +LRD+GGF E  F+
Sbjct: 190 FQDVPLLSGCCMIARSDALRDVGGFNERFFM 220


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,492,144
Number of Sequences: 1657284
Number of extensions: 11633305
Number of successful extensions: 29912
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29908
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)