Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20575
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    29   0.51 
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    27   2.0  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.7  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    27   2.7  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    27   3.6  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    26   4.7  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   8.2  

>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +3

Query: 54  FELPDNSAESTKYLITLLIKEIHPSIGEIRKKLQVK-HIEEQELIKIREVIALCCNQIKK 230
           FEL  N  E   Y+   L  ++ P I E+R+ + ++ H E+ + +K++E +    + I +
Sbjct: 442 FELEINP-EGPNYINLDLKNKVRPFINEVRRSITLEFHEEQNKSLKLQEHVDTVNDLIAE 500

Query: 231 CVVNLLGISS 260
               L GI S
Sbjct: 501 LQDELRGIES 510


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 64  GSSNFILCIISSLFLNSFYIF 2
           G S +IL  I  LF+  FYIF
Sbjct: 178 GESEYILAFIKLLFITGFYIF 198


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 51  KFELPDNSAESTKYLITLLIKEIHPSIGEIRKKLQVKHIEEQE 179
           KF   D+S    + L+  L+ + H  I E+R +     IEE+E
Sbjct: 406 KFLASDHSVPEGQELVNSLLTQCHQLIEELRDEKHQHDIEERE 448


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = -2

Query: 208 SAITSRILINSCSSMCL----TCNFFRISPILGCISLIKSVIKYFVDSAELSGSSNFILC 41
           +AI S ++I++ + + L    T  F+R+ P+  CI  I  ++  F   + +       +C
Sbjct: 472 NAILSAVIIHAVTDLILPMKQTILFWRLQPLEACIFFISVIVSVF---SSIENGIYVSVC 528

Query: 40  IISSLFL 20
           + ++L L
Sbjct: 529 LAAALLL 535


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -3

Query: 429 KYIVVTLIESSVLSLDKLLFLFSRCWSIVFNLSMHHSNLST*HWRLS*RNIP*LYSNLIF 250
           ++I    +E + LS +KLL    + WS++ N    H+ L           IP  Y  L+ 
Sbjct: 420 RHISKRSLEVTKLSKEKLLAYTKKLWSLIVNFEYTHAPL-----------IPDAYMKLLH 468

Query: 249 QEGLPHIF-LFDY 214
               P+IF  +DY
Sbjct: 469 LYEFPNIFSKYDY 481


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 139 ISPILGCISLIKSVIKYFVDSAELSGSSNFILCIISSLFLNSF 11
           I P+  CI LI +++  F     ++ S  F   I +  F N F
Sbjct: 90  IVPVSACICLISTIMTIFAHIGAIARSPGFFNVIGTITFFNIF 132


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 84   TKYLITLLIKEIHPSIGEIRKKLQVKHIEEQELIKIREVIALC 212
            T+ +  +L K +   I  I ++ Q+ H++ Q++I+ R    LC
Sbjct: 983  TERIPAMLCKMLELLIALITEREQILHVDIQDIIRTRLAQQLC 1025


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,328
Number of Sequences: 5004
Number of extensions: 56482
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)