Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20575
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)            30   1.6  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_345| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.8  
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
          Length = 627

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -3

Query: 429 KYIVVTLIESSVLSLDKLLFLFSRCWSIVFNLSMHHSNLST 307
           ++IV TL +  +L  DKLL  FS+ W +  +   HH   ST
Sbjct: 156 RFIVCTLAQDHIL--DKLLAHFSQGWLVRVHKLRHHEKAST 194


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 23/66 (34%), Positives = 34/66 (51%)
 Frame = -2

Query: 208 SAITSRILINSCSSMCLTCNFFRISPILGCISLIKSVIKYFVDSAELSGSSNFILCIISS 29
           SA+     +  CSS+C + + ++ SP+    SL KS   Y   S+ L  SS   L   SS
Sbjct: 737 SALYKSSPLYKCSSLCKSSSLYKSSPLHKSSSLYKS--SYLYKSSYLYKSS--FLYKSSS 792

Query: 28  LFLNSF 11
           L+ +SF
Sbjct: 793 LYKSSF 798


>SB_345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1213

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 45  KIKFELPDNSAESTKYLITLLIKEIHPSIGEIRKKLQVKHIEEQELIKIREV 200
           K++ EL  NS +  KY+     K++HPS G I        ++  +  K+R V
Sbjct: 102 KLELELQQNSTKK-KYITLENAKQLHPSFGSIYSIQNATVLKSHDHEKVRVV 152


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/73 (23%), Positives = 39/73 (53%)
 Frame = +3

Query: 12   KEFRNNELIMHKIKFELPDNSAESTKYLITLLIKEIHPSIGEIRKKLQVKHIEEQELIKI 191
            KE    E  +++++ EL D  A+  K  + +   ++  S+ + +  L  + +E ++L+K 
Sbjct: 1493 KERDELESELNRLRKELADVRAQREK--LNVEKNDLKVSLHKTKSHLAEEEMENEKLVKE 1550

Query: 192  REVIALCCNQIKK 230
             E++ +   Q+KK
Sbjct: 1551 NEILKVELEQLKK 1563


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,813,507
Number of Sequences: 59808
Number of extensions: 373357
Number of successful extensions: 849
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)