Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20575
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f...    29   4.4  
U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiestera...    29   4.4  
U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiestera...    29   4.4  
U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiestera...    29   4.4  
U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiestera...    29   4.4  
U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiestera...    29   4.4  
U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiestera...    29   4.4  
Z54218-2|CAA90956.1|  352|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta
           family protein 4,isoform a protein.
          Length = 1080

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/63 (20%), Positives = 36/63 (57%)
 Frame = +3

Query: 93  LITLLIKEIHPSIGEIRKKLQVKHIEEQELIKIREVIALCCNQIKKCVVNLLGISS*STI 272
           +++LL +E+     +   + + +H+++Q   + +EV  LC + ++KC  N +  ++  T+
Sbjct: 169 ILSLLSEEVFDFGSQNLTQAKEQHLKQQFCGQFQEVFTLCVSILEKCPSNSMVQATLKTL 228

Query: 273 KEY 281
           + +
Sbjct: 229 QRF 231


>U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforma protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 308 VERLEWCIDRLNTIDQH 358
           +E L+WC+D+L TI  H
Sbjct: 90  LEELDWCLDQLETIQTH 106


>U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformd protein.
          Length = 674

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 308 VERLEWCIDRLNTIDQH 358
           +E L+WC+D+L TI  H
Sbjct: 215 LEELDWCLDQLETIQTH 231


>U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformc protein.
          Length = 599

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 308 VERLEWCIDRLNTIDQH 358
           +E L+WC+D+L TI  H
Sbjct: 140 LEELDWCLDQLETIQTH 156


>U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforme protein.
          Length = 612

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 308 VERLEWCIDRLNTIDQH 358
           +E L+WC+D+L TI  H
Sbjct: 153 LEELDWCLDQLETIQTH 169


>U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformb protein.
          Length = 626

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 308 VERLEWCIDRLNTIDQH 358
           +E L+WC+D+L TI  H
Sbjct: 167 LEELDWCLDQLETIQTH 183


>U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformg protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 308 VERLEWCIDRLNTIDQH 358
           +E L+WC+D+L TI  H
Sbjct: 214 LEELDWCLDQLETIQTH 230


>Z54218-2|CAA90956.1|  352|Caenorhabditis elegans Hypothetical
           protein F37B12.3 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 230 MCGKPSWNIKLEYNQGIFLQESR-QCHVERLEWCIDRLNTIDQHLEK 367
           +CG P WN+++      FLQ  R  C    L++CI+  +  D  + K
Sbjct: 310 LCGYPPWNLRITE----FLQSPRLPCSRRGLDYCIEAFSQRDIRVGK 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,383,211
Number of Sequences: 27780
Number of extensions: 308641
Number of successful extensions: 786
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)