Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20575
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40820.1 68418.m04956 FAT domain-containing protein / phospha...    30   1.8  
At1g13330.1 68414.m01547 expressed protein similar to nuclear re...    29   2.3  
At1g70530.1 68414.m08117 protein kinase family protein contains ...    29   4.1  
At4g15890.1 68417.m02415 expressed protein                             28   5.4  
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co...    28   7.2  
At2g18630.1 68415.m02169 expressed protein unusual splice site a...    28   7.2  
At3g10690.1 68416.m01286 DNA gyrase subunit A family protein sim...    27   9.5  
At1g64960.1 68414.m07363 expressed protein                             27   9.5  
At1g61320.1 68414.m06911 hypothetical protein                          27   9.5  

>At5g40820.1 68418.m04956 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            similar to Atr protein [Xenopus laevis] GI:11385422;
            contains Pfam profiles PF00454 Phosphatidylinositol 3-
            and 4-kinase, PF02259 FAT domain, PF02260 FAT C domain
          Length = 2702

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +3

Query: 33   LIMHKIKFELPDNSAESTKYLITLLIKEIHPSIGEIRKKLQVKHIEEQELIKIREVIALC 212
            L++H    +L D S  S KY+I+ +   + P    + K+ +  H+   E++KI E + L 
Sbjct: 1160 LVLHFFTRKLADVSPSSIKYVISQIFAALIPF---LEKEKEGPHVYLDEVVKILEELVLK 1216

Query: 213  CNQIKK 230
               I K
Sbjct: 1217 NRDIVK 1222


>At1g13330.1 68414.m01547 expressed protein similar to nuclear
           receptor coactivator GT198 (GI:16506273) {Rattus
           norvegicus}; similar to TBP-1 interacting protein
           (GI:7328534) [Homo sapiens]
          Length = 226

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/65 (32%), Positives = 35/65 (53%)
 Frame = +3

Query: 51  KFELPDNSAESTKYLITLLIKEIHPSIGEIRKKLQVKHIEEQELIKIREVIALCCNQIKK 230
           K  + D  +E       L ++EI     ++RK  +VK +EE+ L+K+RE I L   + KK
Sbjct: 99  KKTISDVESEIKSLQSNLTLEEIQEKDAKLRK--EVKEMEEK-LVKLREGITLVRPEDKK 155

Query: 231 CVVNL 245
            V ++
Sbjct: 156 AVEDM 160


>At1g70530.1 68414.m08117 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 646

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 437 WIDHTFEVLSKLSEVVYKNDYKENLGCVSSGNLNCCRY*AIFILQLMSYCYL 592
           W+DH F  ++ +S+V +KN  K  LGC  +G  +   Y  I    L  Y ++
Sbjct: 360 WVDHFFNEVNLISQVDHKNLVK-LLGCSITGPESLLVYEYIANQSLHDYLFV 410


>At4g15890.1 68417.m02415 expressed protein
          Length = 1314

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/62 (24%), Positives = 33/62 (53%)
 Frame = +1

Query: 520  ELWKSELLQILSDLHLAIDELLLSAMTLCKYCLPSDQHIVKARCQVVLRETKALMTELIS 699
            EL KS+   + ++L +A+ +  +    + +  +P     ++  C+VV R+T  L++ L+ 
Sbjct: 891  ELEKSDCAALRNNLVVAMTDFCVHYTAMIECYIPKITKRLRDPCEVVRRQTFILLSRLLQ 950

Query: 700  GD 705
             D
Sbjct: 951  RD 952


>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
           contains weak similarity to Peroxisomal membrane protein
           2 (22 kDa peroxisomal membrane protein)
           (Swiss-Prot:P42925) [Mus musculus]
          Length = 965

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/38 (21%), Positives = 20/38 (52%)
 Frame = -2

Query: 211 HSAITSRILINSCSSMCLTCNFFRISPILGCISLIKSV 98
           +    S  ++N C+S+ +    + ++ + G +  +KSV
Sbjct: 546 YDVANSEFMVNECNSLSIWVRLYEVTGVFGFVHYVKSV 583


>At2g18630.1 68415.m02169 expressed protein unusual splice site at
           second intron; GA instead of conserved GT at donor site;
           similar to At14a GI:11994571 and GI:11994573
           [Arabidopsis thaliana]
          Length = 393

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = +3

Query: 12  KEFRNNELIMHKIKFELPDNSAESTKYLITLLIKEIHPSIGEIRKKLQV 158
           KE  N  +++ K++ E+ ++  +  ++ IT   KE+  +I EI+KKL V
Sbjct: 299 KEMDNISILVRKVEVEI-ESLLKKAEFAITEE-KEVRLAIDEIKKKLDV 345


>At3g10690.1 68416.m01286 DNA gyrase subunit A family protein
           similar to SP|P94605 DNA gyrase subunit A (EC 5.99.1.3).
           {Clostridium acetobutylicum}; contains Pfam profiles
           PF00521: DNA gyrase/topoisomerase IV A subunit, PF03989:
           DNA gyrase C-terminal domain beta-propeller
          Length = 950

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 398 LYCH*TNYCFFFQDVGLLYLICLCTIPISLRDIGGFP 288
           L CH  ++  FF D G++Y      IP   R+  G P
Sbjct: 644 LVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTP 680


>At1g64960.1 68414.m07363 expressed protein
          Length = 1168

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -2

Query: 130 ILGCISLIKSVIKYFVDSAELSGSSNF 50
           +L  + ++ ++ K+FV+S E+  +SNF
Sbjct: 891 VLNKVKMLTAIFKFFVESTEMGLASNF 917


>At1g61320.1 68414.m06911 hypothetical protein
          Length = 459

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 51  KFELPDNSAESTKYLITLLIKEIHPSIGEIRKKL-QVKHIEEQELIKIR 194
           KFE+PD+S +  K L TL +      +  I        H+E  ELI+ R
Sbjct: 158 KFEIPDSSPKGLKLLKTLSLMRTQVMVKTIDAIFNNCIHLESLELIECR 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,013,290
Number of Sequences: 28952
Number of extensions: 267749
Number of successful extensions: 675
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)