Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20574
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    25   0.83 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   1.9  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   2.5  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   5.8  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   7.7  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 238 VSFFSSWLCGSIN 200
           V+FFS+W+C  +N
Sbjct: 43  VTFFSAWICALVN 55


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 114 PPLLMNMEKNSEPSITDVF 170
           P ++  +EKN +P  TD F
Sbjct: 390 PEIITYLEKNGKPRTTDTF 408


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +3

Query: 366 QRNRLRIEMNKLKKSMRLKSKYRD*SKN*WNSWILCQM 479
           +R   R     LK   R +  Y D     WN WI+  +
Sbjct: 256 KRQSSRRHRKNLKDPCRRRQMYVDFGSVGWNDWIVAPL 293


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 35  RNS*ERNQESSQEKEKQTSRYN 100
           +NS E+  E  + KEK    YN
Sbjct: 68  KNSPEKESEEKKSKEKPPYSYN 89


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +1

Query: 565 SIPKTPPLQKKPTSPRKIIEPVPPTPNRS 651
           ++PK PP +   TS    +E   P    S
Sbjct: 210 TVPKIPPAEFPTTSSSSALESPDPASRSS 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,601
Number of Sequences: 336
Number of extensions: 2627
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)