Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20574
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    29   0.90 
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    29   0.90 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    28   1.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.1  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    27   2.1  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   2.1  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   2.7  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    26   4.8  
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    26   6.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.4  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    25   8.4  

>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 568 IPKTPPLQKKPTSPRKIIEPVPPTPNRSAETVEL 669
           +PK P    KP     +  P+PPTP    E V +
Sbjct: 155 VPKKPSKPSKPRKKVPVSHPLPPTPPSREEHVSV 188


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 502 KDEADELMNDFADEVFQEVSQSIP 573
           ++EADEL+N   DE+  ++SQ +P
Sbjct: 159 EEEADELVNKVLDEIGVDLSQGLP 182


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +1

Query: 550 QEVSQSIPKTPPLQKKPTSP----RKIIEPVPPTPNRSAETVELLP 675
           +  S+  P+ PP    P+SP    +  I+P PP  N +  T   +P
Sbjct: 365 ERTSEDPPQLPPSPSSPSSPALSVKPNIDPQPPLYNSTLTTTRSIP 410


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +1

Query: 535  ADEVFQEVSQSIP-KTPPLQKKPTSPRKIIEPVPPTPNRSAETVELLPQFELKLPKRP 705
            A ++F  ++ + P  TPP++ +  +P ++  P PP P  S       P      P  P
Sbjct: 1674 AAKLFGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +2

Query: 8   KIQKES*RKRNS*ERNQESSQEKEKQTSRYNKTKYTSIADEH 133
           K++K S ++ +  E++++  ++KEK+     K+K   + D H
Sbjct: 129 KVRKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSH 170


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 389 DEQIKEINEIEVKIQGLKQKLVEQLDSMSDDDEDFLN 499
           D + KEI E+E K+    Q + E  D M+   ED+++
Sbjct: 860 DARKKEIEELESKMSDFDQSVEELQDEMNSIKEDWVS 896


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +1

Query: 556 VSQSIPKTPPLQKKPTSPRKIIEPVPPTP-NRSAETVEL---LPQFELKLPK-RPARDRV 720
           +   IPK     ++  S    + P PP P N SA   E       F+ KLP+  PA ++V
Sbjct: 251 IDNEIPKPSESPRRSVSSTPPVHPPPPVPQNLSAVNEEFDTKKNDFDSKLPESTPAVEKV 310

Query: 721 S 723
           S
Sbjct: 311 S 311


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 505 DEADELMND-FADEVFQEVSQSIPKT 579
           DEAD ++ D FADE+  E+ Q+ PK+
Sbjct: 412 DEADRMLEDGFADEL-NEIIQACPKS 436


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 505 DEADELMND-FADEVFQEVSQSIPKTPPLQKKPTSPRKIIE 624
           DEADEL+N  F ++++       P T  +    T P+ ++E
Sbjct: 170 DEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLE 210


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 559 SQSIPKTPPLQKKPTSPRKIIEPVPPTPNRSAET 660
           S S P TP +    TS   I  P+PPT   S +T
Sbjct: 129 SLSTPITPTVPPTSTSSTSI--PIPPTSTSSTDT 160



 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 559 SQSIPKTPPLQKKPTSPRKIIEPVPPTPNRSAET 660
           S S P TP +    TS   I  P+PPT   S +T
Sbjct: 186 SLSTPITPTVPPTSTSSTSI--PIPPTSTSSTDT 217



 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 559 SQSIPKTPPLQKKPTSPRKIIEPVPPTPNRSAET 660
           S S P TP +    TS   I  P+PPT   S +T
Sbjct: 242 SLSTPITPTVPPTSTSSTSI--PIPPTSTSSTDT 273


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 286 INYRYDWLFAFLTVDLVSFFSSW 218
           I Y   W+F+ L   LV +F++W
Sbjct: 175 ITYILFWMFSLLVGSLVVYFTAW 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,881
Number of Sequences: 5004
Number of extensions: 44025
Number of successful extensions: 198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)