Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20574
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 36 0.044
11_06_0610 - 25449085-25453284 31 0.94
12_02_0193 + 15242068-15242265,15242356-15244589,15244675-152449... 30 1.6
09_02_0369 - 8012470-8013120 29 2.9
07_03_0097 + 13372270-13372399,13372958-13373457 29 2.9
02_04_0223 + 21047240-21047304,21047577-21047706,21048783-210488... 29 2.9
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 29 3.8
04_03_0744 + 19237901-19237912,19238119-19238611,19238860-192389... 29 3.8
01_06_1596 - 38514278-38514346,38514547-38514705,38514776-385148... 29 5.0
01_06_0625 - 30688456-30689880 29 5.0
10_07_0154 + 13487971-13488168,13488259-13488483,13488592-134904... 28 6.6
06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312 28 6.6
06_03_1150 + 28022633-28023374,28023501-28023565 28 6.6
05_05_0111 + 22479971-22480093,22480238-22480471 28 6.6
03_02_0560 + 9462996-9463454 28 6.6
01_06_1288 - 36007432-36007851 28 6.6
09_06_0310 - 22212348-22212695,22213561-22213766,22213796-222139... 28 8.7
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 28 8.7
03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542 28 8.7
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 35.5 bits (78), Expect = 0.044
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 505 DEADELMNDFADEVFQEVSQSIPKTPPLQKKPTSPRKIIEPVPPTPN 645
D +DE + D ++ +E++ S P+ PP+Q++ SP P PP P+
Sbjct: 74 DTSDESLGDDDEDADEELAASAPRYPPVQRR--SPSTAPPPSPPQPS 118
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.1 bits (67), Expect = 0.94
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 580 PPLQKKPTSPRKIIEPVPPTPNRSAETVELLPQFELKLPKRPA 708
PP K P P +I P PP + +LP +K P PA
Sbjct: 1194 PPPVKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSPPPPA 1236
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 580 PPLQKKPTSPRKIIEPVPPTPNRSAETVELLPQFELKLPKRPA 708
PP K P P +I P PP + +LP +K P PA
Sbjct: 1162 PPPIKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSPPPPA 1204
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +1
Query: 550 QEVSQSIPK-TPPLQKKPTSPR-KIIEPVPPTP-NRSAETVELLPQFELKLPKRP 705
+E + S PK TPP +K P +P K P PP P + E P E K P P
Sbjct: 601 EEYTPSPPKSTPPAEKSPPTPESKASSPPPPAPEGHTPSPPESTPPSE-KSPPTP 654
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 568 IPKTPPLQKKPTSPRKIIEPVPPTPNRSAETVELLPQFELKLPKRPA 708
+ PP +K P P +I P PP + + P +K P PA
Sbjct: 1142 VSSPPPPEKSPPPPAPVILPPPPIKSPPPPAPVISPPPPVKSPPPPA 1188
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 577 TPPLQKKPTSPR-KIIEPVPPTP 642
TPP +K P +P K P PPTP
Sbjct: 644 TPPSEKSPPTPESKASSPPPPTP 666
>12_02_0193 +
15242068-15242265,15242356-15244589,15244675-15244926,
15245007-15245117,15245207-15245288,15245563-15245754
Length = 1022
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 568 IPKTPPLQKKPTSPRKIIEPVPPTPNRSAETVELLPQFEL 687
+P P+Q PTSP K + PPTP S +T +PQ L
Sbjct: 607 LPTPQPVQASPTSPTK--QHAPPTP-PSVQTSPPIPQSAL 643
>09_02_0369 - 8012470-8013120
Length = 216
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 571 PKTPPLQKKPTSPRKIIEPVPPTPNRSAET 660
P PPL+ P+ ++ P PP P R A T
Sbjct: 66 PDEPPLKPPPSFYPAVLPPEPPPPRRPAAT 95
>07_03_0097 + 13372270-13372399,13372958-13373457
Length = 209
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 141 NSEPSITDVFAGQILKNHGVLIEPQSQDEKNETKSTVKKA 260
NS P + G + HG P +EK KS +KKA
Sbjct: 129 NSSPPAAEACNGSRQQAHGTAAAPPHPEEKKPVKSNLKKA 168
>02_04_0223 +
21047240-21047304,21047577-21047706,21048783-21048871,
21049592-21049647,21049721-21049776,21050163-21050202,
21050505-21050629,21050715-21050808,21051401-21051480,
21051598-21051640,21057539-21057630,21057746-21057919
Length = 347
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +3
Query: 129 NMEKNSEPSITDVFAGQILKNHGVLIEPQSQDEKNETKSTV 251
++ ++ +PSI++ +A +++ N G L+EP S + E S V
Sbjct: 92 SLNRSGKPSISESWADKVIWNKGNLLEPDSLKDIMEGVSAV 132
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 536 PMKSFRKSHSPSQRLHHCKRNLHHHG 613
P FR S SPSQ HH + H HG
Sbjct: 111 PPPQFRPSPSPSQYDHHSSDHRHGHG 136
>04_03_0744 +
19237901-19237912,19238119-19238611,19238860-19238928,
19239124-19239140,19239260-19239357,19240019-19240156,
19240710-19240899,19241175-19241307,19241505-19242442
Length = 695
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Frame = +1
Query: 610 RKIIEPVPPTPNRSAET---VELLPQFELKLPKR--PARDRVS 723
R+++ P+ P+P RS+ T L P L LP+R P RD+++
Sbjct: 42 RRLLLPLTPSPPRSSSTHGSARLTPPLPLPLPRRQPPWRDQLT 84
>01_06_1596 -
38514278-38514346,38514547-38514705,38514776-38514898,
38514985-38515047,38515248-38515352,38515487-38515586,
38515716-38515786,38516329-38516385,38516830-38516907,
38516975-38517049,38517180-38517230,38517453-38517466,
38517516-38517616,38517703-38517764,38518346-38518372,
38518901-38519581
Length = 611
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 505 DEADELMNDFADEVFQEVSQSIPKTPPLQKKPTSPRKIIEPVPPTPNRS 651
++ D FAD + + +S+ P P+ P P ++ VPP R+
Sbjct: 113 EDEDAAREGFADRIRRMISERPPDDFPMPPPPPPPLPPMQHVPPRQRRT 161
>01_06_0625 - 30688456-30689880
Length = 474
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +2
Query: 551 RKSHSPSQRLHHCKRNLHHHGKLLNLFPLLQIAVQKLLN---CCPN 679
R+S + R+HHC R G L+N F L+ K + C P+
Sbjct: 187 RESDVGTTRIHHCSRMAEARGILVNSFDWLETRALKAIRGGLCLPS 232
>10_07_0154 +
13487971-13488168,13488259-13488483,13488592-13490492,
13490578-13490829,13491110-13491191,13491466-13491657
Length = 949
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 568 IPKTPPLQKKPTSPRKIIEPVPPTPNRSAETVELLPQFEL 687
+P P+Q PTSP K + PP P+ S +T PQ L
Sbjct: 571 LPAPQPVQASPTSPAK--QHAPPAPS-SVQTSPPTPQSAL 607
>06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312
Length = 270
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 565 SIPKTPPLQKKPTSPRKIIEPVPPTP 642
S P +PP Q P SP P PP P
Sbjct: 137 SSPVSPPSQASPASPAAPAPPSPPQP 162
>06_03_1150 + 28022633-28023374,28023501-28023565
Length = 268
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 565 SIPKTPPLQKKPTSPRKIIEPVPPTP 642
S P +PP Q P SP P PP P
Sbjct: 137 SSPVSPPSQASPASPAAPAPPSPPQP 162
>05_05_0111 + 22479971-22480093,22480238-22480471
Length = 118
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 508 EADELMNDFADEVFQEVSQSIPKTPPLQKKPTSPRKIIE 624
+A +MN F +++F+++ Q + KKPT + I+
Sbjct: 51 KAMSIMNSFVNDIFEKLEQEAARLARYNKKPTITSREIQ 89
>03_02_0560 + 9462996-9463454
Length = 152
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 508 EADELMNDFADEVFQEVSQSIPKTPPLQKKPTSPRKIIE 624
+A +MN F +++F++++Q + KKPT + I+
Sbjct: 85 KAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQ 123
>01_06_1288 - 36007432-36007851
Length = 139
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 508 EADELMNDFADEVFQEVSQSIPKTPPLQKKPTSPRKIIE 624
+A +MN F +++F++++Q + KKPT + I+
Sbjct: 72 KAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQ 110
>09_06_0310 -
22212348-22212695,22213561-22213766,22213796-22213905,
22214351-22214427,22214466-22214486,22214518-22215651
Length = 631
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +1
Query: 523 MNDFADEVFQEVSQSIPKTPPLQKKPTSPRKIIEPVPPTPNRSAETVEL 669
M D D V +V + P PP +S +K P P P A+ L
Sbjct: 1 MADDGDAVLSDVDEEDPLPPPPPPSTSSSQKSPSPSQPQPQPHAQAQRL 49
>04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 677 WGNNSTVSALRFGVGGTGSIIFRGDVGFFCSGGVFGMD 564
W + ++ + VG + S+ GD FC GG G D
Sbjct: 1342 WSEATALAEVLPPVGASASLAGSGDRSLFCGGGCRGAD 1379
>03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542
Length = 138
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/37 (45%), Positives = 18/37 (48%)
Frame = +1
Query: 532 FADEVFQEVSQSIPKTPPLQKKPTSPRKIIEPVPPTP 642
FA EV VS K P KKP P K +P PP P
Sbjct: 63 FAAEV---VSVEPEKKPEAPKKPDDPPKKPDPPPPCP 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,672,997
Number of Sequences: 37544
Number of extensions: 275957
Number of successful extensions: 1623
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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