Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20574
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   9.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 553 EVSQSIPKTPPLQKKPTSPRKIIEPVPPTPNRSAETVELLP 675
           + +QS P +PP+  K    ++  E +PP P +    +  +P
Sbjct: 613 DTNQSCP-SPPVTTKRDGTQETEERLPPLPPKRIRKMPSMP 652


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 117 PLLMNMEKNSEPSITDVFAGQILKNHGVLIE 209
           P+++ + K  +P+I  +     L  HG++IE
Sbjct: 247 PIIVAINKIDKPNIDIIKVQYELAKHGIVIE 277


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 93  DIIRPNIPPLLMNMEKNSE 149
           +I+RP+   +LM ++KN +
Sbjct: 264 NIVRPDFINMLMELQKNPQ 282


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +1

Query: 583 PLQKKPTSPRKIIEPVPPTPNRSAETVELLP 675
           P  K P  P +  +P+P  P        +LP
Sbjct: 66  PFAKPPIGPLRFRKPLPIEPWHGVLNATVLP 96


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +1

Query: 583 PLQKKPTSPRKIIEPVPPTPNRSAETVELLP 675
           P  K P  P +  +P+P  P        +LP
Sbjct: 66  PFAKPPIGPLRFRKPLPIEPWHGVLNATVLP 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,807
Number of Sequences: 438
Number of extensions: 2973
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)