Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20574
(728 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing prote... 33 0.15
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 31 1.0
At3g09170.1 68416.m01088 Ulp1 protease family protein contains P... 29 2.4
At1g34610.1 68414.m04301 Ulp1 protease family protein contains P... 29 2.4
At3g43583.1 68416.m04636 hypothetical protein 29 3.2
At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identic... 29 3.2
At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identic... 29 3.2
At5g59910.1 68418.m07513 histone H2B nearly identical to histone... 29 4.2
At2g28720.1 68415.m03491 histone H2B, putative strong similarity... 29 4.2
At2g23990.2 68415.m02866 plastocyanin-like domain-containing pro... 29 4.2
At2g23990.1 68415.m02865 plastocyanin-like domain-containing pro... 29 4.2
At5g40450.1 68418.m04905 expressed protein 28 5.5
At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family... 28 5.5
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family... 28 5.5
At4g03000.2 68417.m00408 expressed protein contains similarity t... 28 5.5
At4g03000.1 68417.m00407 expressed protein contains similarity t... 28 5.5
At2g37470.1 68415.m04596 histone H2B, putative strong similarity... 28 5.5
At2g27190.1 68415.m03268 iron(III)-zinc(II) purple acid phosphat... 28 5.5
At1g07790.1 68414.m00843 histone H2B, putative strong similarity... 28 5.5
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa... 28 7.3
At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family... 28 7.3
At4g10320.1 68417.m01697 isoleucyl-tRNA synthetase, putative / i... 28 7.3
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 28 7.3
At2g25250.1 68415.m03021 expressed protein 28 7.3
At2g15300.1 68415.m01745 leucine-rich repeat transmembrane prote... 28 7.3
At5g45830.1 68418.m05637 expressed protein low similarity to tum... 27 9.6
At3g07610.1 68416.m00911 transcription factor jumonji (jmjC) dom... 27 9.6
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 27 9.6
At2g23770.1 68415.m02839 protein kinase family protein / peptido... 27 9.6
At1g63420.1 68414.m07172 expressed protein 27 9.6
At1g27720.1 68414.m03388 transcription initiation factor IID (TF... 27 9.6
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 27 9.6
At1g13220.1 68414.m01533 nuclear matrix constituent protein-rela... 27 9.6
>At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing protein
contains Pfam domain PF03194: LUC7 N_terminus
Length = 402
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +2
Query: 11 IQKES*RKRNS*ERNQESSQEKEKQTSRYNKTKY 112
I+KE ++RNS ER +EKE++TSR ++ Y
Sbjct: 315 IRKERSKERNSKERESSKDREKEQETSREHRRDY 348
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +1
Query: 526 NDFADEVFQEVSQSIPKTPPLQKKPT-SPRKIIEPVPPTPNRSAETVELLPQFELKLPKR 702
N A + S IP TP P +P+K P PPTP +S L P PK+
Sbjct: 67 NGSAPAISISPSTPIPSTPSTPSPPPPAPKK--SPPPPTPKKSPSPPSLTPFVPHPTPKK 124
>At3g09170.1 68416.m01088 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1000
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 496 KYKDEADELMNDFADEVFQEVSQSIPKTPPLQKKPTSPRKI 618
K DE D + +F+ + QE++ + + PP KK T P K+
Sbjct: 640 KLDDEVDIVEPNFSLGLTQEINDNRSRLPPRGKKKTFPSKV 680
>At1g34610.1 68414.m04301 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 997
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 496 KYKDEADELMNDFADEVFQEVSQSIPKTPPLQKKPTSPRKI 618
K DE D + +F+ + QE++ + + PP KK T P K+
Sbjct: 637 KLDDEVDIVEPNFSLGLTQEINDNRSRLPPRGKKKTFPSKV 677
>At3g43583.1 68416.m04636 hypothetical protein
Length = 100
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 571 PKTPPLQKKPTSPRKIIEPVPP 636
P+ PP +KPTSP + P PP
Sbjct: 35 PEPPPSPEKPTSPEQPSSPEPP 56
>At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identical
to gi_11935086_gb_AAG41963
Length = 162
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 571 PKTPPLQKKPTSPRKIIEPVPPTPNRSAETVELLPQFELKLPKRP 705
P T P + KPTSP I P PTP + + + ++ P P
Sbjct: 32 PSTSPHKPKPTSP--AISPAAPTPESTEAPAKTPVEAPVEAPPSP 74
>At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identical
to gi_11935086_gb_AAG41963
Length = 185
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 571 PKTPPLQKKPTSPRKIIEPVPPTPNRSAETVELLPQFELKLPKRP 705
P T P + KPTSP I P PTP + + + ++ P P
Sbjct: 32 PSTSPHKPKPTSP--AISPAAPTPESTEAPAKTPVEAPVEAPPSP 74
>At5g59910.1 68418.m07513 histone H2B nearly identical to histone
H2B Arabidopsis thaliana GI:2407802; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 520 LMNDFADEVFQEVSQSIPKTPPLQKKPTSPRKIIE 624
+MN F +++F++++Q K KKPT + I+
Sbjct: 87 IMNSFINDIFEKLAQEASKLARYNKKPTITSREIQ 121
>At2g28720.1 68415.m03491 histone H2B, putative strong similarity to
histone H2B Arabidopsis thaliana GI:2407802, Gossypium
hirsutum SP|O22582; contains Pfam profile PF00125 Core
histone H2A/H2B/H3/H4
Length = 151
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 520 LMNDFADEVFQEVSQSIPKTPPLQKKPTSPRKIIE 624
+MN F +++F++++Q K KKPT + I+
Sbjct: 88 IMNSFINDIFEKLAQEASKLARYNKKPTITSREIQ 122
>At2g23990.2 68415.m02866 plastocyanin-like domain-containing
protein
Length = 226
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 577 TPPLQKKPTSPRKIIEPVPPTPNRSAETVELLP 675
TP L KP++ P PPTP+ + T + P
Sbjct: 161 TPTLPPKPSTTPAAPAPAPPTPSPKSSTSTMAP 193
>At2g23990.1 68415.m02865 plastocyanin-like domain-containing
protein
Length = 207
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 577 TPPLQKKPTSPRKIIEPVPPTPNRSAETVELLP 675
TP L KP++ P PPTP+ + T + P
Sbjct: 142 TPTLPPKPSTTPAAPAPAPPTPSPKSSTSTMAP 174
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +1
Query: 550 QEVSQSIPKTPPLQKKPTSPRKIIEPVP---PTPNRSAETVE 666
+E + S+P++ L+++P R +I+P P PT +E +E
Sbjct: 909 KEETVSVPESIELEEQPQEERSVIDPTPLQKPTLESPSEVLE 950
>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
protein
Length = 438
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 550 QEVSQSIP-KTPPLQKKPTSPRKIIEPVPPTPNR-SAETVELLPQFELKLPKRP 705
Q +P TPP Q + + P PP P+ S+ + PQ++ P +P
Sbjct: 190 QNTPAPVPVSTPPSQLQAPPAQSQFMPPPPAPSHPSSAQTQSFPQYQQNWPPQP 243
>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
protein
Length = 496
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 550 QEVSQSIP-KTPPLQKKPTSPRKIIEPVPPTPNR-SAETVELLPQFELKLPKRP 705
Q +P TPP Q + + P PP P+ S+ + PQ++ P +P
Sbjct: 248 QNTPAPVPVSTPPSQLQAPPAQSQFMPPPPAPSHPSSAQTQSFPQYQQNWPPQP 301
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +1
Query: 508 EADELMNDFADEVFQEVSQSIPKTPPLQKKPTSPRKIIEPVPPTPNRSAETVELLPQFEL 687
E E MN+F +V S +PP K + RK+ +P P ++A ++ P++EL
Sbjct: 3 EKQEEMNEFGAVNGGKVGTSSSVSPPQDKGRKNKRKLADPSP----QNAASLTEFPRYEL 58
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +1
Query: 508 EADELMNDFADEVFQEVSQSIPKTPPLQKKPTSPRKIIEPVPPTPNRSAETVELLPQFEL 687
E E MN+F +V S +PP K + RK+ +P P ++A ++ P++EL
Sbjct: 3 EKQEEMNEFGAVNGGKVGTSSSVSPPQDKGRKNKRKLADPSP----QNAASLTEFPRYEL 58
>At2g37470.1 68415.m04596 histone H2B, putative strong similarity to
histone H2B from Lycopersicon esculentum GI:3021483,
GI:3021485, Capsicum annuum SP|O49118; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 138
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 520 LMNDFADEVFQEVSQSIPKTPPLQKKPTSPRKIIE 624
+MN F +++F++++Q K KKPT + I+
Sbjct: 76 IMNSFINDIFEKLAQESSKLARYNKKPTITSREIQ 110
>At2g27190.1 68415.m03268 iron(III)-zinc(II) purple acid phosphatase
(PAP12) identical to iron(III)-zinc(II) purple acid
phosphatase [precursor] SP:Q38924 from [Arabidopsis
thaliana]
Length = 469
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 704 GLLGSFSSNWGNNSTVSALRFGVGGTGSIIFRGDVGF 594
GL+G + +NST+S G +++F GD+ +
Sbjct: 164 GLIGDLGQTYDSNSTLSHYEMNPGKGQAVLFVGDLSY 200
>At1g07790.1 68414.m00843 histone H2B, putative strong similarity to
histone H2B Arabidopsis thaliana GI:2407802, Gossypium
hirsutum SP|O22582, Lycopersicon esculentum GI:3021489,
Capsicum annuum SP|O49118; contains Pfam profile PF00125
Core histone H2A/H2B/H3/H4
Length = 148
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 520 LMNDFADEVFQEVSQSIPKTPPLQKKPTSPRKIIE 624
+MN F +++F++++Q K KKPT + I+
Sbjct: 85 IMNSFINDIFEKLAQESSKLARYNKKPTITSREIQ 119
>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
family protein contains Pfam profile PF01190: Pollen
proteins Ole e I family
Length = 401
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 565 SIPKTPPLQKKPTSPRKIIEPVPPTPN-RSAETVELLPQFELKLPKRP 705
S+P P + PT P + P PPTP T+ LP + LP P
Sbjct: 297 SLPPIPLIPTPPTLPTIPLLPTPPTPTLPPIPTIPTLPPLPV-LPPVP 343
>At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; Common family member: At2g22510
[Arabidopsis thaliana]
Length = 128
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 562 QSIPKT-PPLQKKPTSPRKIIEPVPPTPNRSAETVELLPQFELKLPK 699
QS P T PP P P+ + PVP P +T LPQ + LP+
Sbjct: 33 QSTPVTQPPALTFPPLPKTTMPPVPSLPTPGQQT---LPQPQPTLPQ 76
>At4g10320.1 68417.m01697 isoleucyl-tRNA synthetase, putative /
isoleucine--tRNA ligase, putative similar to SP|P41252
Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5)
(Isoleucine--tRNA ligase) (IleRS) (IRS) {Homo sapiens};
contains Pfam profile PF00133: tRNA synthetases class I
(I, L, M and V)
Length = 1190
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 120 LLMNMEKNSEPSI-TDVFAGQILKNHGVLIEPQSQDEKNETKSTVKKAKSQSY 275
+L++ E+N + SI + + ++ +H V+I ++ K + +VKK SY
Sbjct: 1052 VLVSQEQNIKDSIGSTLLLSSLMPSHAVIIADETFTPKETSDESVKKVPKLSY 1104
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 511 ADELMNDFADEVFQEVSQSIPKTPPLQKKPTSPRKIIEP 627
A E+ +DF E + + + ++ +T L K P K+ P
Sbjct: 165 AKEIPDDFVQEKYVQENHAVKQTEVLSKSINEPEKVFTP 203
>At2g25250.1 68415.m03021 expressed protein
Length = 155
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 514 DELMNDFADEVFQEVSQSIPKTPPLQKKPTSPRKIIEPVPPTPNRSAETVELLPQFE 684
D ++N F+ + P T ++ P+S + I PP+P+ V +L + E
Sbjct: 10 DSIINHFSTNTSPPLRHKKPITNRRRRSPSSHQSQISHPPPSPHNHTNHVRILKRGE 66
>At2g15300.1 68415.m01745 leucine-rich repeat transmembrane protein
kinase, putative
Length = 744
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +1
Query: 565 SIPKT---PPLQKKPTSPRKIIEPVPPTP-NRSAETVELLPQFELK 690
SIP T PP + TSP + P PTP N S E+ + +LK
Sbjct: 287 SIPSTLSDPPNISETTSPAIAVMPTTPTPTNSSTESTNQTAKSKLK 332
>At5g45830.1 68418.m05637 expressed protein low similarity to
tumor-related protein [Nicotiana glauca x Nicotiana
langsdorffii] GI:688423
Length = 291
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +2
Query: 392 EQIKEINEIEVKIQGLKQKLVEQLDSMSDDDED 490
EQ+ +IN + VKI ++K+ +++ S+ +D D
Sbjct: 144 EQLAKINVLHVKIIDEEEKMTKKVSSLQEDAAD 176
>At3g07610.1 68416.m00911 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 1027
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 389 DEQIKEINEIEVKIQGLKQKLVEQLDSMSDDDE 487
DEQ+ E E+E KI GLK + V D+ + DE
Sbjct: 250 DEQVAE-KEVEAKIYGLKFEEVRPQDAKAFPDE 281
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Frame = +1
Query: 574 KTPPLQKKPT---SPRKIIEPV-PPTP 642
K PPLQK PT SP + PV PPTP
Sbjct: 404 KPPPLQKPPTPTYSPPIKLPPVKPPTP 430
>At2g23770.1 68415.m02839 protein kinase family protein /
peptidoglycan-binding LysM domain-containing protein
contains Pfam domains, PF00069: Protein kinase domain
and PF01476: LysM domain
Length = 612
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +1
Query: 535 ADEVFQEVSQSIPKTP---PLQKKPTSPRKIIEPVPPTPNRSAETVELLP 675
A+E+ E S+ P T PL P + +I P PP P +S L P
Sbjct: 213 ANEMSFENSEVFPFTTILIPLVNPPANTNSLIPPPPPPPPQSVSPPPLSP 262
>At1g63420.1 68414.m07172 expressed protein
Length = 578
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 550 QEVSQSIPKTPPLQKKPTSPRKIIEPVPPTPNRSAE 657
Q S S +TP L KK S R I + P P R +E
Sbjct: 91 QNRSGSCSRTPLLNKKKPSHRPTITTIKPVPVRVSE 126
>At1g27720.1 68414.m03388 transcription initiation factor IID
(TFIID) component TAF4 family protein contains Pfam
profile PF05236: Transcription initiation factor TFIID
component TAF4 family
Length = 682
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = +2
Query: 2 SKKIQKES*RKRNS*ERNQESSQEKEKQTSRYNKTKYTSIADEHGKEFRAIN 157
++K+++E +K + E+N+E+ EKE Q R N+ K + DE + +A N
Sbjct: 546 NQKVKEEWEKKHSGEEKNKENDTEKEDQ--RSNEVK-ANKKDEDKERAKAAN 594
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 392 EQIKEINEIEVKIQGLKQKLVEQLDSMSDDDEDFLNIRTKL 514
+Q + +NE E K+QG ++ + EQ +++ +E I KL
Sbjct: 260 KQREYLNEWEKKLQGKEESITEQKRNLNQREEKVNEIEKKL 300
>At1g13220.1 68414.m01533 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 391
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 392 EQIKEINEIEVKIQGLKQKLVEQLDSMSDDDEDFLNIRTKL 514
+Q + +NE E K+QG ++ + EQ +++ +E I KL
Sbjct: 273 KQREYLNEWEKKLQGKEESITEQKRNLNQREEKVNEIEKKL 313
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,120,196
Number of Sequences: 28952
Number of extensions: 232729
Number of successful extensions: 1381
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -