Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20573
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 40 2e-04
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 37 0.001
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 37 0.002
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 36 0.003
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 36 0.003
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 35 0.008
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 35 0.008
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 34 0.014
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 31 0.073
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 31 0.073
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 31 0.096
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 31 0.096
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 31 0.13
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 31 0.13
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 31 0.13
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 30 0.17
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 30 0.17
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 29 0.29
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 29 0.29
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 29 0.29
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 29 0.39
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 29 0.39
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 29 0.39
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 29 0.51
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 29 0.51
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 28 0.68
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 28 0.68
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 28 0.90
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 27 1.2
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 27 1.6
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 1.6
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 27 1.6
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 1.6
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 27 2.1
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 27 2.1
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 27 2.1
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 2.1
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 2.7
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 26 3.6
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 26 3.6
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 25 4.8
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 6.3
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 25 6.3
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 6.3
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 6.3
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 25 8.4
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 25 8.4
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 25 8.4
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 25 8.4
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 39.9 bits (89), Expect = 2e-04
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
C+ L H H+ FH S ++S S+DQTV+VW+
Sbjct: 129 CIAILTGHSHYVMCAAFHPSEDLIVSASLDQTVRVWD 165
Score = 35.9 bits (79), Expect = 0.003
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
+ L +L H + FH P+++S S DQT+++W + ++C
Sbjct: 86 KLLFSLCGHMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQSRNC 129
Score = 26.6 bits (56), Expect = 2.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 55 FHRSLPYVISGSVDQTVKVW 114
FH +LP ++S D+ VK+W
Sbjct: 220 FHPTLPLILSAGDDRLVKLW 239
Score = 25.8 bits (54), Expect = 3.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 16 TLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
T H + + FH ++S S D+T++VW+
Sbjct: 251 TCRGHFNNVSCCLFHPHQELILSASEDKTIRVWD 284
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 55 FHRSLPYVISGSVDQTVKVWECR*KHCHFS 144
FH + P +SG D V VW + + FS
Sbjct: 61 FHPTQPLFVSGGDDYKVNVWNYKSRKLLFS 90
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 37.1 bits (82), Expect = 0.001
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
C++ L H + + FH P +ISGS D TVK+W
Sbjct: 220 CVRILEGHTNNVSFAFFHSKFPIIISGSEDGTVKIW 255
Score = 27.9 bits (59), Expect = 0.90
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 16 TLYAHHHFATSLDFHRS--LPYVISGSVDQTVKVWECR*KHC 135
TL AH ++++ + PY+I+ D +KVW+ + K C
Sbjct: 179 TLQAHDRGVNYVNYYPAGDKPYLITAGDDNLIKVWDYQTKAC 220
Score = 26.2 bits (55), Expect = 2.7
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 13 KTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
+ L +H ++DFH + P+VI+ + V +W
Sbjct: 8 RKLLSHTERVKAVDFHPTEPWVIASHYNGQVGIW 41
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 36.7 bits (81), Expect = 0.002
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHCHFSNLNSPMISLSLYFH 186
L+TL H +SL F+ S + SGS D+TV++W+ + L P LSL FH
Sbjct: 460 LETLAGHEGPVSSLSFNSSGSLLASGSWDKTVRIWDIFSRSGIVEPLPIPSDVLSLAFH 518
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 36.3 bits (80), Expect = 0.003
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC--HFSNLNSPMISLSL 177
RCLK H ++ +S+DF+ ++SGS D+TV++W + C + P+IS+S+
Sbjct: 132 RCLK---GHTNYVSSIDFNPLGTLLVSGSWDETVRIWNLQDGTCLRMLPAHSEPIISVSI 188
Score = 28.3 bits (60), Expect = 0.68
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 16 TLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
TL+ H+ + + + Y+ S S D+T+++W+ K C
Sbjct: 91 TLFGHYRGISQVKWATGSKYLASASDDKTIRIWDFE-KRC 129
Score = 25.4 bits (53), Expect = 4.8
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +1
Query: 16 TLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
TL+ H T + + ++ + S D T+K+W
Sbjct: 49 TLFGHEKSVTCVSVSPNKRWIATSSSDGTIKIW 81
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 35.9 bits (79), Expect = 0.003
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
+K AH + TSLDF + + S D+TVKVW+
Sbjct: 325 VKQFQAHSEYITSLDFSHPFGTLATASTDKTVKVWD 360
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR 123
+++ H +SL F + ++ SGS D +V++W+ R
Sbjct: 529 VRSFIGHTAPISSLQFDSN--HLYSGSYDNSVRIWDLR 564
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 34.7 bits (76), Expect = 0.008
Identities = 15/60 (25%), Positives = 34/60 (56%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHCHFSNLNSPMISLSLYF 183
+ ++ L+ H + TS DF + ++++ S+D T++ W+ H ++++P + SL F
Sbjct: 563 KIVRELWGHSNRLTSFDFSDTGRWLVTASLDGTIRTWDLPTGHL-IDSISTPSVCTSLTF 621
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 34.7 bits (76), Expect = 0.008
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHCH-FSNLNSPMIS 168
R L+ H TS+D + +S S+D T+++W+ R +C N++SP+++
Sbjct: 103 RYLRYFPGHKQTVTSIDVSPADETFLSASLDNTIRLWDLRSPNCQGLLNVSSPVVA 158
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 33.9 bits (74), Expect = 0.014
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
++ L+ H S+ F Y++SGS+D T+K+WE
Sbjct: 451 VEQLHGHEESVYSVAFSPDGKYLVSGSLDNTIKLWE 486
Score = 29.9 bits (64), Expect = 0.22
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
R + L H SLDF + ++SGS D+TV +W+
Sbjct: 367 RVYRLLTGHEQEIYSLDFSKDGKTLVSGSGDRTVCLWD 404
Score = 29.5 bits (63), Expect = 0.29
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
C +T H F S+ ++ISGS D+T++ W
Sbjct: 504 CKQTFTGHKDFILSVTVSPDGKWIISGSKDRTIQFW 539
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 31.5 bits (68), Expect = 0.073
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR 123
L+ H + + FH + Y+ +GS D T ++W+ R
Sbjct: 480 LRVFVGHQNDVDCVSFHPNAAYLATGSSDHTTRMWDVR 517
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 31.5 bits (68), Expect = 0.073
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
L LY H LDF R ++SGS D T+ +W+
Sbjct: 254 LYKLYGHSGSVLCLDFCRRRNLLVSGSSDSTIIIWD 289
Score = 28.7 bits (61), Expect = 0.51
Identities = 10/43 (23%), Positives = 20/43 (46%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
C+ L H S+ + +++ S D+T++ W+ HC
Sbjct: 339 CMHVLRGHLASVNSVQYSSKTGLIVTASSDRTLRTWDITTGHC 381
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 31.1 bits (67), Expect = 0.096
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
++ L H S+ F ++SGS+D+T+KVWE
Sbjct: 477 VERLEGHKESVYSIAFSPDSSILLSGSLDKTIKVWE 512
Score = 30.7 bits (66), Expect = 0.13
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 28 HHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
H SLDF + +++SGS D+T ++W+ C
Sbjct: 401 HEQDIYSLDFSHNGRFIVSGSGDRTARLWDVETGQC 436
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 31.1 bits (67), Expect = 0.096
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
R +KT+ H SL F R ++SG D TV+ W+
Sbjct: 538 RRIKTMRGHRGNIYSLSFSRESTVLVSGGSDCTVRAWD 575
Score = 29.5 bits (63), Expect = 0.29
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KH 132
L+ H + FH + YV++GS D+T ++W+ H
Sbjct: 456 LRVFAGHLSDVDCVTFHPNSAYVLTGSSDKTCRLWDVHRGH 496
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 30.7 bits (66), Expect = 0.13
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
+ +K + HH F L F ++ S S D T+KVW+
Sbjct: 175 KLIKVIEGHHTFVGGLAFDPMGQFLASQSFDHTLKVWK 212
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 30.7 bits (66), Expect = 0.13
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR 123
L T H + T++ FH ++ + S D TVKVW+ R
Sbjct: 76 LMTFEGHTNNVTAIAFHCDGKWLATSSEDGTVKVWDMR 113
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 30.7 bits (66), Expect = 0.13
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 13 KTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC--HFSNLNSPMISLSL 177
+ L H HF + Y +S S D+T+++W+ C F S ++S+S+
Sbjct: 57 RRLTGHSHFVSDCALSFDSHYALSASWDKTIRLWDLEKGECTHQFVGHTSDVLSVSI 113
Score = 25.8 bits (54), Expect = 3.6
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
C H S+ V+SGS D+T+K+W
Sbjct: 97 CTHQFVGHTSDVLSVSISPDNRQVVSGSRDKTIKIW 132
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 30.3 bits (65), Expect = 0.17
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 22 YAHHHFATSLDFH-RSLPYVISGSVDQTVKVWECR*KHCHFSN 147
+ H F TS+ FH + + +SGS+D +++W + K F N
Sbjct: 346 FEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAVSFWN 388
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 73 YVISGSVDQTVKVWECR*KHCH 138
YVI GS D V +W+ +H H
Sbjct: 506 YVICGSEDHQVFIWDLPPQHMH 527
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 30.3 bits (65), Expect = 0.17
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 16 TLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC-H-FSNLNSPMISLSL 177
TL H S+ R V+SGS D T+K+W C H FS P+ SL+L
Sbjct: 387 TLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQSLAL 442
Score = 29.9 bits (64), Expect = 0.22
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 1 TRCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
+ C+ L+ H L F +L ++SGS D TVK+W
Sbjct: 343 SECISILHGHTDSVLCLTFDSTL--LVSGSADCTVKLW 378
Score = 29.1 bits (62), Expect = 0.39
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 19 LYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
L H T L F + +ISGS+D+T+++W R C
Sbjct: 309 LEGHSSGVTCLQFDQCK--LISGSMDKTIRIWNYRTSEC 345
Score = 27.9 bits (59), Expect = 0.90
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +1
Query: 4 RCLKTLYAHHH--FATSLDFHRSLPYVISGSVDQTVKVWE-CR*KHCHFSNLNSPMISLS 174
+C+ TL+ H + + D R +ISG+ D VKVWE C H N + P+ S++
Sbjct: 465 KCVHTLFGHIEGVWEIAADHLR----LISGAHDGVVKVWEACECVHT-LKNHSEPVTSVA 519
Query: 175 L 177
L
Sbjct: 520 L 520
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
CL T AH SL S + S S+D T+K W+ K C
Sbjct: 426 CLHTFSAHIGPVQSLALADSR--LFSCSLDGTIKQWDIEKKKC 466
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 29.5 bits (63), Expect = 0.29
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
L+T + TSL H P +GS +Q++K+W+
Sbjct: 1214 LQTFSTDNSGLTSLTVHSHAPVYATGSSNQSIKIWD 1249
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 29.5 bits (63), Expect = 0.29
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 19 LYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
L H H + F+ S ++SGS+D+++++W+
Sbjct: 97 LEGHEHNIPCITFNSSGTLLLSGSIDRSLQIWD 129
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 29.5 bits (63), Expect = 0.29
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 19 LYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
L H + S+D+H + ++S S D ++ VWE
Sbjct: 264 LMGHEDWVMSVDWHPTKEMILSSSADSSMIVWE 296
Score = 25.4 bits (53), Expect = 4.8
Identities = 6/16 (37%), Positives = 15/16 (93%)
Frame = +1
Query: 70 PYVISGSVDQTVKVWE 117
P+++SG+ D+T+++W+
Sbjct: 69 PFILSGASDKTLRLWQ 84
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 29.1 bits (62), Expect = 0.39
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDF-HRSLPYVISGSVDQTVKVWE 117
RCL+ L ++ PY++SGS D T++VW+
Sbjct: 435 RCLEILVPSRLIRHGVEIVEPDQPYIVSGSRDHTLRVWK 473
Score = 29.1 bits (62), Expect = 0.39
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
C L H F T L+ ++ +ISGS D T+++W+
Sbjct: 581 CKYVLEGHDAFVTLLNVFQNR--LISGSADSTIRIWD 615
Score = 26.6 bits (56), Expect = 2.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 76 VISGSVDQTVKVWECR*KHC 135
++SGS+D+TV+VW C
Sbjct: 404 LVSGSIDKTVRVWNIEKAKC 423
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHCHF 141
CL L H S+ + ISGS+D++++VW+ C +
Sbjct: 539 CLYHLRGHSLRIYSVLYEPERNICISGSMDKSIRVWDLSTGTCKY 583
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 29.1 bits (62), Expect = 0.39
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
C+KT+ + T++ + V G +D +K+W+ R HC
Sbjct: 170 CIKTIEEKYPL-TAVAIAQQGTQVFIGGIDGAIKIWDLRNNHC 211
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 29.1 bits (62), Expect = 0.39
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +1
Query: 10 LKTLYA-HHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
+K +Y+ H+ T + +S Y+IS S+DQT++VW+
Sbjct: 298 VKDIYSGHYESVTKILQWKS--YLISSSLDQTIRVWD 332
Score = 25.8 bits (54), Expect = 3.6
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
C++TL H + L ++SGS D ++ VW+
Sbjct: 124 CVETLIGHTDYVKCLLLLEEEGLLLSGSTDASLIVWD 160
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 28.7 bits (61), Expect = 0.51
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
L TL H T++DF + + SGS+D + VW+
Sbjct: 97 LITLNGHKSAVTTMDFDKMGTRLASGSMDTDIIVWD 132
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 19 LYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHCHFS 144
LY H S+D +++ S D+ VK+W CH S
Sbjct: 572 LYGHKLPVLSMDISYDSKLLVTCSADKNVKIWGLDFGDCHKS 613
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 28.7 bits (61), Expect = 0.51
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 13 KTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
K LY H S+++ R V SGSVD++ KV++
Sbjct: 68 KALYEHQGPVLSVNWSRDGTKVASGSVDKSAKVFD 102
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 28.3 bits (60), Expect = 0.68
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 19 LYAHHHFATSLDFHR-SLPYVISGSVDQTVKVWE-CR*KHCHFSNLNSPMISLSLY 180
++ H+ T + FH Y +SGS+D +++W R K H++ L + ++ Y
Sbjct: 291 VFRHNEIVTCVAFHPIDDRYFVSGSLDCKIQLWSILRHKILHWTELEYVVSTICFY 346
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 28.3 bits (60), Expect = 0.68
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 1 TRCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR 123
+R + H L F + +++SGS D+TV+VW +
Sbjct: 179 SRSMAVFEGHSSVIRGLTFEPTGSFLLSGSRDKTVQVWNIK 219
Score = 25.8 bits (54), Expect = 3.6
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
R + T+ AH ++ + + S S D+T+K+W+
Sbjct: 456 RAVWTIKAHDRDVNAIQVSKDGRIIASASQDKTIKLWD 493
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 27.9 bits (59), Expect = 0.90
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = +1
Query: 1 TRCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
TRC H L H S ++ SG D +++WE C
Sbjct: 369 TRCTNVFIGHKGRVRCLSVHVSGNWLASGGDDGVLRIWEVMTGRC 413
Score = 26.6 bits (56), Expect = 2.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 13 KTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR 123
K L H + +H SLP SGS D V+V+ R
Sbjct: 647 KNLRYHSRALRDVSYHPSLPLFCSGSDDGDVQVFHGR 683
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.5 bits (58), Expect = 1.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 43 TSLDFHRSLPYVISGSVDQTVKVWECR 123
T++ F Y+ SGS D V++W R
Sbjct: 320 TAVKFSMDAQYIFSGSDDSNVRLWRAR 346
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KH 132
R L H S+DF + +SGS D+T++++ R H
Sbjct: 264 RALHVYKDHVSAVMSVDFSPTGQEFVSGSYDKTIRIYNVREGH 306
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 1.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 76 VISGSVDQTVKVWECR*KHC 135
+++GS D+TV+VW+ R C
Sbjct: 459 LVTGSTDRTVRVWDLRTGEC 478
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 46 SLDFHRSLPYVISGSVDQTVKVW 114
S D + PY+IS S D T+++W
Sbjct: 515 SNDANSMPPYIISSSRDCTIRLW 537
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 1.6
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 19 LYAHHHFATSLDFHRSLPYVI-SGSVDQTVKVWECR*KHCHFSNLNSPMISLSLYFH 186
L H + +H + V+ S S D T+K+W+C H S L ++ S+ F+
Sbjct: 130 LKGHSRKVGLVQYHPTAANVLASSSADNTIKLWDCEKGVAHVS-LKMDVMCQSMSFN 185
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
LK + AH + F + Y + S D+T+KVW
Sbjct: 169 LKRIEAHQSHVKGITFDPAGKYFATESDDRTIKVW 203
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 19 LYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
L H ++D+H S + SGS D VK W+ R C
Sbjct: 202 LTGHGWDVKTVDWHPSKGLLASGSKDNLVKFWDPRTGTC 240
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHCHFSNLNSPMISLSLYFHV 189
L+T H L F + +S S D+T+K+W+ C + NS ++ + F V
Sbjct: 303 LRTFQGHARPIRDLSFSQDGRSFLSTSFDKTIKLWDTELGKC-LNCFNSDRLTNCVKFQV 361
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 2.1
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR 123
L T H + D ++S ++SG+ D T+++W+ +
Sbjct: 45 LGTYEGHTGAIWTCDINKSSTLMVSGAADNTMRLWDVK 82
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 2.1
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR 123
C + + H L + RSL + SG D + VW+ R
Sbjct: 241 CAEMMKVHEQEICGLQWDRSLGQLASGGNDNNLFVWDYR 279
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.6 bits (56), Expect = 2.1
Identities = 9/38 (23%), Positives = 23/38 (60%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR 123
+ + Y H+ AT + ++ P++++ S + V++W+ R
Sbjct: 359 VNSFYDWHNGATQVKWNYKNPHILASSHGRLVRIWDDR 396
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSL---PYVIS 84
L + YAHH+ +S+D +RS+ P VIS
Sbjct: 451 LSSTYAHHYIDSSMDSNRSIEPEPDVIS 478
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 3.6
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 13 KTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR 123
+ L H ++ ++ + SGS D V++W+CR
Sbjct: 92 RRLGGHLAQINTIRYNEDSSILASGSFDSKVRLWDCR 128
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 3.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 76 VISGSVDQTVKVWECR*KHCHFS 144
+++ S D T+K+W R + C FS
Sbjct: 231 ILTASSDATIKLWSLRAQKCLFS 253
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
L L+ H F SL + + + S D+T+++W+
Sbjct: 208 LYELHGHTSFVYSLTYIHNQQLIASCGEDRTIRIWK 243
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 55 FHRSLPYVISGSVDQTVKVWE 117
FH S Y++S S D T ++W+
Sbjct: 273 FHPSGDYLVSASFDTTWRLWD 293
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 6/29 (20%)
Frame = -2
Query: 194 YRT*KYNDKDIIG------EFKLLKWQCF 126
Y K+NDK+ +G E ++LKW CF
Sbjct: 74 YEKGKHNDKEGLGPVNEVEEAEMLKWMCF 102
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +1
Query: 22 YAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
+AH + +L ++ + +++ S D TVK+W
Sbjct: 385 HAHDNSIVALRYNLRISLLLTASSDTTVKLW 415
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 381 SMPKI*TDYKFNLSRIDLDHESACTDIASS 292
S+ + TDY + + + LDHE +D + S
Sbjct: 1204 SLQSLDTDYPIDTNALSLDHEQGFSDDSDS 1233
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
CL L H + +H + ++SGS D ++ W
Sbjct: 415 CLAVLQEHTQDVKVVTWHPTEDLLVSGSYDNSICFW 450
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1
Query: 79 ISGSVDQTVKVWE 117
+SGS D+TVKVW+
Sbjct: 140 LSGSDDKTVKVWD 152
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 521
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +1
Query: 70 PYVISGSVDQTVKVWECR*KHCHFSNLNSPMISLS 174
PY++ GS + + W C + C F+ + S ++ ++
Sbjct: 230 PYLVEGSTGRFLGFWACLVQSC-FAYVGSEVVGIA 263
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
L T H H ATS+ F + ++ SG V+ +V +W+
Sbjct: 18 LTTTLKHGH-ATSIRFSTNGYHLASGLVNGSVVIWD 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,056
Number of Sequences: 5004
Number of extensions: 40157
Number of successful extensions: 202
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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