Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20573
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.4  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 300 LCLYTHFHDLDLSGSN*ICNPFIFLA*IRTFHYNTILDSYQLV 428
           +CL T+   +    +   CN F     +   H+N +LD Y L+
Sbjct: 523 ICLLTNARRVASVRAETYCNLFS----LSVDHFNAVLDQYPLM 561


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 324  HESACTDIASSTVR 283
            H++ CT + S T+R
Sbjct: 1086 HDTTCTTLTSQTIR 1099


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 300 LCLYTHFHDLDLSGSN*ICNPFIFLA*IRTFHYNTILDSYQLV 428
           +CL T+   +    +   CN F     +   H+N +LD Y L+
Sbjct: 491 ICLLTNARRVASVRAETYCNLFS----LSVDHFNAVLDQYPLM 529


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,193
Number of Sequences: 438
Number of extensions: 2938
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)