Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20573
(498 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 45 2e-05
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 44 4e-05
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 44 6e-05
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 43 1e-04
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 42 2e-04
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 42 2e-04
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 42 2e-04
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 40 7e-04
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 39 0.002
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 38 0.003
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 38 0.003
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 37 0.009
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea... 36 0.011
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 35 0.026
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 33 0.081
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 33 0.14
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 33 0.14
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 33 0.14
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 32 0.19
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 32 0.19
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 32 0.19
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 32 0.19
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 32 0.25
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 32 0.25
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 31 0.33
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 31 0.33
At3g08850.1 68416.m01029 transducin family protein / WD-40 repea... 31 0.43
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 31 0.43
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 31 0.57
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 31 0.57
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 31 0.57
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 30 0.75
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 30 0.75
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 30 0.75
At5g66240.2 68418.m08345 transducin family protein / WD-40 repea... 30 1.00
At5g66240.1 68418.m08344 transducin family protein / WD-40 repea... 30 1.00
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 30 1.00
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 30 1.00
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 30 1.00
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 30 1.00
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 30 1.00
At5g45760.2 68418.m05626 transducin family protein / WD-40 repea... 29 1.3
At5g45760.1 68418.m05625 transducin family protein / WD-40 repea... 29 1.3
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 29 1.3
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 29 1.3
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 29 1.3
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 29 1.3
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 29 1.3
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 29 1.7
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 29 1.7
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 29 1.7
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 29 2.3
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 29 2.3
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 29 2.3
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 29 2.3
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 29 2.3
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 29 2.3
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 28 3.0
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 28 3.0
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 28 3.0
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 28 3.0
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 28 3.0
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 28 4.0
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 28 4.0
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 28 4.0
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 28 4.0
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 28 4.0
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 27 5.3
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 27 5.3
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 27 5.3
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 27 5.3
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 27 5.3
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 27 5.3
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 27 5.3
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 27 7.0
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 27 7.0
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 27 7.0
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 27 7.0
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea... 27 9.3
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea... 27 9.3
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 27 9.3
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 27 9.3
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 27 9.3
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 27 9.3
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 27 9.3
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 45.2 bits (102), Expect = 2e-05
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
RCL TL H + ++ FH P+++S S DQT+++W + + C
Sbjct: 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC 127
Score = 40.7 bits (91), Expect = 5e-04
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
C+ L H+H+ FH V+S S+DQTV+VW+
Sbjct: 127 CVSVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163
Score = 32.7 bits (71), Expect = 0.14
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 28 HHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHCHFSNLNSPMISLSLYFH 186
H + FH S P +SG D +KVW + C F+ L ++ FH
Sbjct: 50 HEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFH 102
Score = 30.3 bits (65), Expect = 0.75
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 16 TLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
TL H + +S+ FH ++S S D++++VW+
Sbjct: 243 TLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWD 276
Score = 29.9 bits (64), Expect = 1.00
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 55 FHRSLPYVISGSVDQTVKVW 114
FH +LP ++SG+ D+ VK+W
Sbjct: 212 FHPTLPLIVSGADDRQVKLW 231
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 44.4 bits (100), Expect = 4e-05
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
RCL TL H + ++ FH P+++S S DQT+++W + + C
Sbjct: 84 RCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTC 127
Score = 41.1 bits (92), Expect = 4e-04
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
C+ L H+H+ FH V+S S+DQTV+VW+
Sbjct: 127 CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163
Score = 32.7 bits (71), Expect = 0.14
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 28 HHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHCHFSNLNSPMISLSLYFH 186
H + FH S P +SG D +KVW + C F+ L ++ FH
Sbjct: 50 HEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFH 102
Score = 30.7 bits (66), Expect = 0.57
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 19 LYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
L H FH +LP ++SG+ D+ VK+W
Sbjct: 200 LEGHDRGVNWASFHPTLPLIVSGADDRQVKLW 231
Score = 30.3 bits (65), Expect = 0.75
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 16 TLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
TL H + +S+ FH ++S S D++++VW+
Sbjct: 243 TLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWD 276
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 44.0 bits (99), Expect = 6e-05
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
C++TL H H +++ FH LP +I+GS D TV++W
Sbjct: 221 CVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIW 256
Score = 34.3 bits (75), Expect = 0.046
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
+K AH + + H +LPYV+S S D +K+W+
Sbjct: 92 IKVFEAHADYIRCVAVHPTLPYVLSSSDDMLIKLWD 127
Score = 32.7 bits (71), Expect = 0.14
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 16 TLYAHHHFATSLDFHRS--LPYVISGSVDQTVKVWECR*KHC 135
TL AH +D+ PY+I+GS D T KVW+ + K C
Sbjct: 180 TLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC 221
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFH-RSLPYVISGSVDQTVKVW 114
C + H H+ + F+ + S S+D+T+K+W
Sbjct: 134 CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 42.7 bits (96), Expect = 1e-04
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
C++TL H H +++ FH LP +I+GS D TV++W
Sbjct: 221 CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
Score = 34.3 bits (75), Expect = 0.046
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
+K AH + + H +LPYV+S S D +K+W+
Sbjct: 92 VKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127
Score = 33.9 bits (74), Expect = 0.061
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 16 TLYAHHHFATSLDFHRS--LPYVISGSVDQTVKVWECR*KHC 135
TL AH +D+ PY+I+GS D T KVW+ + K C
Sbjct: 180 TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC 221
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFH-RSLPYVISGSVDQTVKVW 114
C + H H+ + F+ + S S+D+T+K+W
Sbjct: 134 CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
C++TL H H +++ FH LP +I+GS D TV++W
Sbjct: 221 CVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
Score = 34.3 bits (75), Expect = 0.046
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
+K AH + + H +LPYV+S S D +K+W+
Sbjct: 92 VKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127
Score = 33.9 bits (74), Expect = 0.061
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 16 TLYAHHHFATSLDFHRS--LPYVISGSVDQTVKVWECR*KHC 135
TL AH +D+ PY+I+GS D T KVW+ + K C
Sbjct: 180 TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC 221
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
C++TL H H +++ FH LP +I+GS D TV++W
Sbjct: 221 CVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
Score = 34.3 bits (75), Expect = 0.046
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
+K AH + + H +LPYV+S S D +K+W+
Sbjct: 92 VKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127
Score = 33.9 bits (74), Expect = 0.061
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 16 TLYAHHHFATSLDFHRS--LPYVISGSVDQTVKVWECR*KHC 135
TL AH +D+ PY+I+GS D T KVW+ + K C
Sbjct: 180 TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC 221
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
C++TL H H +++ FH LP +I+GS D TV++W
Sbjct: 221 CVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
Score = 34.3 bits (75), Expect = 0.046
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
+K AH + + H +LPYV+S S D +K+W+
Sbjct: 92 VKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127
Score = 33.9 bits (74), Expect = 0.061
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 16 TLYAHHHFATSLDFHRS--LPYVISGSVDQTVKVWECR*KHC 135
TL AH +D+ PY+I+GS D T KVW+ + K C
Sbjct: 180 TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC 221
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 40.3 bits (90), Expect = 7e-04
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
CLK L H +F ++F+ ++SGS D+T+++WE + C
Sbjct: 120 CLKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVKTGKC 162
Score = 31.5 bits (68), Expect = 0.33
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHCHFSNLN--SPMISLSL 177
+C++ + AH +S+ F+R ++S S D + K+W+ + C + ++ SP +S +
Sbjct: 161 KCVRMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIWDAKEGTCLKTLIDDKSPAVSFAK 220
Query: 178 Y 180
+
Sbjct: 221 F 221
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
+CLK L AH T++DF+R ++S S D ++W+ HC
Sbjct: 146 KCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHC 189
Score = 37.1 bits (82), Expect = 0.007
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
+KTL H ++A ++F+ ++SGS D+TV++W+
Sbjct: 106 IKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWD 141
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
+ L+ L H ++ H + + SGS+D+TV++W
Sbjct: 276 KLLQKLEGHTETVMNVACHPTENLIASGSLDKTVRIW 312
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
+ ++TL H S+DFH + SGS+D +K+W+ R K C
Sbjct: 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC 135
Score = 29.9 bits (64), Expect = 1.00
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
+ L +H SLDFH + +GS D+TVK W+
Sbjct: 176 KLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWD 213
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
C+ T H L F +V+SG D VKVW+
Sbjct: 135 CIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWD 171
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
+ ++TL H S+DFH + SGS+D +K+W+ R K C
Sbjct: 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC 135
Score = 29.9 bits (64), Expect = 1.00
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
+ L +H SLDFH + +GS D+TVK W+
Sbjct: 176 KLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWD 213
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
C+ T H L F +V+SG D VKVW+
Sbjct: 135 CIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWD 171
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 36.7 bits (81), Expect = 0.009
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
+ ++TL H S++FH + SGS+D +K+W+ R K C
Sbjct: 185 KVVRTLTGHRSNCVSVNFHPFGEFFASGSLDTNLKIWDIRKKGC 228
Score = 29.9 bits (64), Expect = 1.00
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
+ L +H SLDFH + +GS D+TVK W+
Sbjct: 269 KLLHEFKSHEGKIQSLDFHPHEFLLATGSADKTVKFWD 306
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
C+ T H L F +++SG D VKVW+
Sbjct: 228 CIHTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWD 264
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
sapiens]
Length = 482
Score = 36.3 bits (80), Expect = 0.011
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
LK L H T DF + Y+ S S+D+T++VWE
Sbjct: 209 LKQLTGHSKDVTDFDFSSNNQYIASSSLDKTIRVWE 244
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 35.1 bits (77), Expect = 0.026
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHR-SLPYVISGSVDQTVKVWECR*KH-CHFSNLNSPMISLSLY 180
CLK L+AH+ + T + F Y +SGS+D +++W + +H +S+L+ M++ + Y
Sbjct: 539 CLK-LFAHNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQDRHVVEWSDLHE-MVTAACY 596
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 19 LYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHCHFSNLN 153
+ AH ++ F + Y+ SG D+ + VWE + C ++N
Sbjct: 400 IQAHEGAVWTIKFSQDAHYLASGGADRVIHVWEV--QECELMSMN 442
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 33.5 bits (73), Expect = 0.081
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHR-SLPYVISGSVDQTVKVWECR*KHCHFSNLNSPMISLSLYF 183
CLK L+AH+ + T + F+ Y ISGS+D +++W + N M++ Y
Sbjct: 552 CLK-LFAHNDYVTCVQFNPLDEDYFISGSLDAKIRIWNISNRQVVEWNDLKEMVTAVCY- 609
Query: 184 HVR*LQ*GQINYAGSFSSH 240
GQ + GS + H
Sbjct: 610 ----TPDGQAAFVGSINGH 624
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 32.7 bits (71), Expect = 0.14
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHR-SLPYVISGSVDQTVKVWE 117
CL+T + H++F T + F+ Y ISGS+D V++W+
Sbjct: 355 CLRT-FTHNNFVTCVAFNPVDDNYFISGSIDGKVRIWD 391
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 32.7 bits (71), Expect = 0.14
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHR-SLPYVISGSVDQTVKVWE 117
CL+T + H++F T + F+ Y ISGS+D V++W+
Sbjct: 355 CLRT-FTHNNFVTCVAFNPVDDNYFISGSIDGKVRIWD 391
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 32.7 bits (71), Expect = 0.14
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
C++T H ++++F +V+SG +D VKVW+
Sbjct: 83 CIQTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWD 119
Score = 31.9 bits (69), Expect = 0.25
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +1
Query: 1 TRCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
++ ++ H ++++FH ++ SGS D ++VW+ R K C
Sbjct: 39 SKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDTNLRVWDTRKKGC 83
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
+ L H SLDFH + +GS D+TVK W+
Sbjct: 124 KLLHEFKCHEGPIRSLDFHPLEFLLATGSADRTVKFWD 161
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 32.3 bits (70), Expect = 0.19
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
+ ++ H ++++FH ++ SGS D +K+W+ R K C
Sbjct: 91 KMVRAFTGHRSNCSAVEFHPFGEFLASGSSDANLKIWDIRKKGC 134
Score = 31.1 bits (67), Expect = 0.43
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
C++T H +++ F +V+SG +D VKVW+
Sbjct: 134 CIQTYKGHSRGISTIRFTPDGRWVVSGGLDNVVKVWD 170
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 46 SLDFHRSLPYVISGSVDQTVKVWE 117
SLDFH + +GS D+TVK W+
Sbjct: 189 SLDFHPLEFLLATGSADRTVKFWD 212
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 32.3 bits (70), Expect = 0.19
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWEC 120
L TL H TS+ F V++ S D+TV++W C
Sbjct: 257 LSTLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGC 293
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 32.3 bits (70), Expect = 0.19
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFH-RSLPYVISGSVDQTVKVWECR*KHC 135
+CLK L H + FH R V SGS+D V++W + C
Sbjct: 136 KCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAKTGEC 180
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 32.3 bits (70), Expect = 0.19
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFH-RSLPYVISGSVDQTVKVWECR*KHC 135
+CLK L H + FH R V SGS+D V++W + C
Sbjct: 136 KCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAKTGEC 180
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 31.9 bits (69), Expect = 0.25
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 16 TLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR 123
T+ AH T+L HR P + SGS Q +KV+ +
Sbjct: 1265 TIDAHRGSLTALGVHRHAPIIASGSAKQLIKVFSLK 1300
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 31.9 bits (69), Expect = 0.25
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +1
Query: 16 TLYAHHHFATSLDFHRSLPYVIS-GSVDQTVKVWE 117
T+ H ATS+ ++ S P +++ GS D+TVK+W+
Sbjct: 364 TINGHDEAATSVSYNISAPNLLATGSKDRTVKLWD 398
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 31.5 bits (68), Expect = 0.33
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
RC+ L H+ SL + + SGS D TVK+W+
Sbjct: 574 RCITPLMGHNSCVWSLSYSGEGSLLASGSADCTVKLWD 611
Score = 31.1 bits (67), Expect = 0.43
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 43 TSLDFHRSLPYVISGSVDQTVKVWECR*KHC--HFSNLNSPMISLSL 177
+ +D+H + Y+ +GS D+TV++W+ + C F S ++SL++
Sbjct: 503 SDVDWHPNCNYIATGSSDKTVRLWDVQTGECVRIFIGHRSMVLSLAM 549
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 31.5 bits (68), Expect = 0.33
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
+K L H + F RS YVI+GS D+ VK+W
Sbjct: 298 IKKLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIW 332
>At3g08850.1 68416.m01029 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies, 1 weak)
Length = 1344
Score = 31.1 bits (67), Expect = 0.43
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 16 TLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
T+ AH T+L HR P + SGS Q +KV+
Sbjct: 1256 TIDAHRGSLTALAVHRHAPIIASGSAKQLIKVF 1288
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 31.1 bits (67), Expect = 0.43
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
+C++++ AH S+ SL V +GS D TVKVW+
Sbjct: 168 KCIESIKAHDDAVNSVTTAESL--VFTGSADGTVKVWK 203
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 30.7 bits (66), Expect = 0.57
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 19 LYAHHHFATSLDFHR-SLPYVISGSVDQTVKVW 114
++AH+ + TS+ F+ + Y +SGS+D V++W
Sbjct: 364 VFAHNSYVTSVQFNPVNENYFMSGSIDGKVRIW 396
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 30.7 bits (66), Expect = 0.57
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
+K L H + RS YVI+GS D+ VKVW +C
Sbjct: 238 IKRLRGHRNAVYCAILDRSGRYVITGSDDRLVKVWSMDTAYC 279
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 30.7 bits (66), Expect = 0.57
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFH-RSLPYVISGSVDQTVKVWECR*KHCHFSNLNSPMISLSLYF 183
CLK L H + FH V SGS+D V++W C S+L I+ S+ F
Sbjct: 140 CLKVLTGHRRTPWVVRFHPHHSEIVASGSLDLEVRLWNTTTSECIRSHLFYRPIA-SIAF 198
Query: 184 H 186
H
Sbjct: 199 H 199
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 30.3 bits (65), Expect = 0.75
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR 123
+ TL H SL +++ Y+++GSVD+T VW+ +
Sbjct: 358 ISTLSKHKGPIFSLKWNKKGDYLLTGSVDRTAVVWDVK 395
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR 123
+ L + H SL F + Y+ SGS+D+++ +W +
Sbjct: 532 KMLCSFNGHREPVYSLAFSPNGEYIASGSLDKSIHIWSIK 571
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 30.3 bits (65), Expect = 0.75
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR 123
R ++ H ++ F+ S V+S D++++VW+CR
Sbjct: 93 RVIRKFRGHDGEVNAVKFNDSSSVVVSAGFDRSLRVWDCR 132
Score = 29.9 bits (64), Expect = 1.00
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
+ L AH TS+ +H +++ SVD T++VW+
Sbjct: 261 KVLSKFRAHDLVVTSVSYHPKEDCMLTSSVDGTIRVWK 298
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 30.3 bits (65), Expect = 0.75
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHR-SLPYVISGSVDQTVKVW 114
CLK +++H + T + F+ Y ISGS+D V+VW
Sbjct: 546 CLK-VFSHSDYVTCIQFNPVDDRYFISGSLDAKVRVW 581
>At5g66240.2 68418.m08345 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 331
Score = 29.9 bits (64), Expect = 1.00
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
L+ HH SL ISGS+D+TV +W+ R + C
Sbjct: 113 LRYFKGHHDRVVSLSLCSGGECFISGSLDRTVLLWDQRVEKC 154
>At5g66240.1 68418.m08344 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 328
Score = 29.9 bits (64), Expect = 1.00
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
L+ HH SL ISGS+D+TV +W+ R + C
Sbjct: 110 LRYFKGHHDRVVSLSLCSGGECFISGSLDRTVLLWDQRVEKC 151
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 29.9 bits (64), Expect = 1.00
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHR-SLPYVISGSVDQTVKVW 114
CLK +++H + T + F+ Y ISGS+D V++W
Sbjct: 501 CLK-VFSHSDYVTCIQFNPVDDNYFISGSLDAKVRIW 536
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 29.9 bits (64), Expect = 1.00
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 46 SLDFHRSLPYVISGSVDQTVKVWECR 123
S+D+H + ++SG DQ VK+W+ R
Sbjct: 273 SVDWHPTKSLLVSGGKDQLVKLWDTR 298
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 29.9 bits (64), Expect = 1.00
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*K 129
+ +++ + H H L H +L V++G D +VW+ R K
Sbjct: 245 KVIRSYHGHLHGVYCLALHPTLDVVLTGGRDSVCRVWDIRTK 286
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 13 KTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
+ L H + S+ F S + +GS D+T+K+W+
Sbjct: 164 RVLQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWD 198
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 70 PYVISGSVDQTVKVWECR 123
P VI+GS D T+K W+ R
Sbjct: 308 PQVITGSHDSTIKFWDLR 325
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 29.9 bits (64), Expect = 1.00
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 10 LKTLYAHHHFATSL-DFHRSLPYVISGSVDQTVKVWECR 123
+K + H F S R P +ISGS D T K+W+ R
Sbjct: 131 IKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMR 169
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 43 TSLDFHRSLPYVISGSVDQTVKVWECR 123
T++ F + + +G VD VKVW+ R
Sbjct: 184 TAVSFSDAADKIFTGGVDNDVKVWDLR 210
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 29.9 bits (64), Expect = 1.00
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 73 YVISGSVDQTVKVWECR*KHCHFS 144
Y+ + S DQT+++W+ R C+FS
Sbjct: 12 YLATASHDQTIRLWQARTGRCYFS 35
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
++ +H ++ F + + SGS D +VK+W+ R + C
Sbjct: 77 VRNFVSHTKNVMAVGFQYTGHMMYSGSEDGSVKIWDLRVREC 118
>At5g45760.2 68418.m05626 transducin family protein / WD-40 repeat
family protein
Length = 334
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +1
Query: 73 YVISGSVDQTVKVWEC-R*KHCHFSNLNSPMISLSL 177
++ISG D+TVK+W+C + + +N NS ++ L++
Sbjct: 265 FLISGGNDKTVKIWDCFKCLDPNNNNNNSDLLHLNI 300
>At5g45760.1 68418.m05625 transducin family protein / WD-40 repeat
family protein
Length = 360
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +1
Query: 73 YVISGSVDQTVKVWEC-R*KHCHFSNLNSPMISLSL 177
++ISG D+TVK+W+C + + +N NS ++ L++
Sbjct: 291 FLISGGNDKTVKIWDCFKCLDPNNNNNNSDLLHLNI 326
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 19 LYAHHHFATSLDFHR-SLPYVISGSVDQTVKVW 114
+++H+++ TS+ F+ + ISGS+D V++W
Sbjct: 392 IFSHNNYVTSVQFNPVDDDHFISGSIDGKVRIW 424
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 19 LYAHHHFATSLDFHR-SLPYVISGSVDQTVKVW 114
+++H+++ TS+ F+ + ISGS+D V++W
Sbjct: 392 IFSHNNYVTSVQFNPVDDDHFISGSIDGKVRIW 424
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
L TL H TS+ F V++ S D+TV++W
Sbjct: 257 LSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIW 291
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
L TL H TS+ F V++ S D+TV++W
Sbjct: 257 LSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIW 291
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKV 111
C++ AH TSL F R ++S S DQT ++
Sbjct: 297 CIRRFDAHSQGVTSLSFSRDGSQLLSTSFDQTARI 331
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHR-SLPYVISGSVDQTVKVWE 117
C++ +++H F T + F+ Y ISGS+D V++W+
Sbjct: 397 CIR-VFSHKSFVTCVAFNPVDDNYFISGSIDGKVRIWD 433
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 29.1 bits (62), Expect = 1.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 19 LYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
L H H + FH S + +GS D +++W+
Sbjct: 13 LRGHRHSVMDVSFHPSKSLLFTGSADGELRIWD 45
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
C K+++AH + F R+ Y+ S D+ VK W+
Sbjct: 616 CHKSIFAHGDSVMGVKFVRNTHYLFSIGKDRLVKYWD 652
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
C++ + HH S+D YV++GS DQ ++ +
Sbjct: 182 CMQIVSGHHSEVWSVDTDPEERYVVTGSADQELRFY 217
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 16 TLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHCHFS 144
+LY H +D +++GS D+ +K+W CH S
Sbjct: 577 SLYGHKLPVMCIDISSDGELIVTGSQDKNLKIWGLDFGDCHKS 619
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 1 TRCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
++CL++++AH S+ V +GS D TVKVW+
Sbjct: 267 SKCLESIHAHDDAINSV-MSGFDDLVFTGSADGTVKVWK 304
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 16 TLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
T +H + ++ F ++ SGS D TVK+W+ R C
Sbjct: 73 TYDSHTNNVMAVGFQCDAKWMYSGSEDGTVKIWDLRAPGC 112
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR 123
L T H+ D R +I+GS DQT K+W+ +
Sbjct: 45 LGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVK 82
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR 123
L T H+ D R +I+GS DQT K+W+ +
Sbjct: 45 LGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVK 82
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR 123
L T H+ D R +I+GS DQT K+W+ +
Sbjct: 45 LGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWDVK 82
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 28 HHHFATSLDFHRSLP-YVISGSVDQTVKVW 114
H A S+DF R+ P ++SGS D VKVW
Sbjct: 462 HEKRAWSVDFSRTEPSMLVSGSDDCKVKVW 491
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 19 LYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR 123
L H T +D Y IS DQT+K+W+ R
Sbjct: 314 LVGHLEGVTFIDSRGDGRYFISNGKDQTIKLWDIR 348
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
+ LK + H+ T L F ++SGS D +++VW
Sbjct: 111 KLLKKWHGHYRSVTCLVFSGDDSLLVSGSQDGSIRVW 147
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR 123
L T H D R +I+GS DQT K+W+ +
Sbjct: 72 LGTYRGHSGAVWCCDISRDSSRLITGSADQTAKLWDVK 109
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 1 TRCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
++CL+++ AH S+ + V SGS D TVK W+
Sbjct: 238 SKCLESIPAHDDAVNSV-VSTTEAIVFSGSADGTVKAWK 275
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +1
Query: 16 TLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
T H + ++ S +++GS D T ++W+C+ C
Sbjct: 196 TFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTGKC 235
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
RC +T+ H + F + SGS D TV++W+
Sbjct: 100 RCSQTIAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWD 137
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 76 VISGSVDQTVKVWECR*K 129
++SGS D T+K+WE R K
Sbjct: 417 LLSGSKDSTLKIWEIRTK 434
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 31 HHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHCHFS 144
HH F + SGSVD+T+KVW+ C +
Sbjct: 310 HHSGEVTCFVVGGEVLYSGSVDKTIKVWDLNTLQCRMT 347
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 13 KTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
+ + H + S+ F S + +GS D+T+K+W+
Sbjct: 170 RVIQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWD 204
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 19 LYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR 123
L H + S+ + P V++GS D T+K W+ R
Sbjct: 298 LSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWDLR 332
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 28 HHHFATSLDFHRSLPYVI-SGSVDQTVKVWECR*KHC 135
H A S+DF + P + SGS D +VK+W ++C
Sbjct: 795 HEKRAWSVDFSEACPTKLASGSDDCSVKLWNINERNC 831
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 28 HHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
H+ + L + L + SGS D+T+KVW C
Sbjct: 248 HYDAVSCLSLNEELGLLYSGSWDKTLKVWRLSDSKC 283
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
C H TS+ S ++ SGS D +V++WE C
Sbjct: 415 CYLEYKGHTGAVTSISTDSSGEWIASGSTDGSVRMWEVETGRC 457
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 28 HHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
H H T + F + + + S D+T+K+W+
Sbjct: 549 HAHIITDVRFRPNSTQLATSSFDKTIKIWD 578
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 28 HHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
H H T + F + + + S D+T+K+W+
Sbjct: 551 HAHIITDVRFRPNSTQLATSSFDKTIKIWD 580
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 28 HHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
H H T + F + + + S D+T+K+W+
Sbjct: 551 HAHIITDVRFRPNSTQLATSSFDKTIKIWD 580
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 28 HHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
H H T + F + + + S D+T+K+W+
Sbjct: 551 HAHIITDVRFRPNSTQLATSSFDKTIKIWD 580
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 28 HHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
H H T + F + + + S D+T+K+W+
Sbjct: 551 HAHIITDVRFRPNSTQLATSSFDKTIKIWD 580
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVW 114
C L H + +H ++ + S S D T+KVW
Sbjct: 155 CAAVLTGHTQDVKMVQWHPTMDVLFSCSYDNTIKVW 190
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 4 RCLKTLYAHHHFATSLDFHR-SLPYVISGSVDQTVKVWECR*KHC 135
R TL H ++D + S +V+S + D+T+K+W+ +C
Sbjct: 306 RVRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWDLHKGYC 350
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 76 VISGSVDQTVKVWECR*KHC-HFSNLNSPMISL 171
+ S S+D T++VW+C C H NL++ SL
Sbjct: 146 LFSVSIDGTLRVWDCNSGQCVHSINLDAEAGSL 178
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/34 (29%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 19 LYAHHHFATSLDFHRSLPYVIS-GSVDQTVKVWE 117
++AH +S+ ++ P +++ GS D++VK+W+
Sbjct: 341 IHAHDSEVSSISYNIHAPNLLATGSADESVKLWD 374
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 28 HHHFATSLDFHRSLPYVISGSVDQTVKVW 114
H + + L F + SGS D+TVKVW
Sbjct: 263 HRNTVSCLCFRYGTSELYSGSFDRTVKVW 291
>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 337
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 4 RCLKTLYAHHHFA--TSLDFHRSLPYVISGSVDQTVKVWE 117
+C++++ H + TS F + +V+S D TVK+WE
Sbjct: 207 KCVRSIGNAHGKSEVTSAVFTKDQRFVLSSGKDSTVKLWE 246
>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 429
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 4 RCLKTLYAHHHFA--TSLDFHRSLPYVISGSVDQTVKVWE 117
+C++++ H + TS F + +V+S D TVK+WE
Sbjct: 299 KCVRSIGNAHGKSEVTSAVFTKDQRFVLSSGKDSTVKLWE 338
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +1
Query: 10 LKTLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
L L H + + + +GS D+T++VW+C C
Sbjct: 144 LTQLDGHEKLVSGIALPSGSDKLYTGSKDETLRVWDCASGQC 185
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFH--RSLPYVISGSVDQTVKVWECR*KH 132
C H +S+ FH + +ISGS D TV+VW+ K+
Sbjct: 136 CTHYFRGHKGVVSSILFHPDSNKNILISGSDDATVRVWDLNAKN 179
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +1
Query: 7 CLKTLYAHHHFATSLDFHRSLP---YVISGSVDQTVKVWECR*KHC 135
C L H SLD S +++GS D+TV++W K C
Sbjct: 393 CSYVLAGHKEVVLSLDTCVSSSGNVLIVTGSKDKTVRLWNATSKSC 438
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 16 TLYAHHHFATSLDFHRSLPYVISGSVDQTVKVWE 117
TL AH TSL + V S S D+ VK+W+
Sbjct: 898 TLPAHEGLITSLAVSTATGLVASASHDKLVKLWK 931
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 76 VISGSVDQTVKVWECR 123
+++GS D TVKVW+ R
Sbjct: 194 LVTGSYDHTVKVWDAR 209
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 28 HHHFATSLDFHRSLPYVISGSVDQTVKVWECR*KHC 135
H + L + L + SGS D+T+KVW C
Sbjct: 244 HFDAVSCLSLNEDLGLLYSGSWDKTLKVWRLSDSKC 279
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,409,405
Number of Sequences: 28952
Number of extensions: 199989
Number of successful extensions: 738
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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