Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20572
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    28   1.1  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   5.8  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   5.8  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    26   5.8  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    25   7.6  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   7.6  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   7.6  

>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +2

Query: 50  GWDKIQVVNYKEAQKYMDHIFVMSYDFKGAWSN--DTLGHQTALYAPSWSPKE 202
           GW   +      +  Y  H+ V   +  G WS   D   HQ ++ A SW+P E
Sbjct: 60  GWAHPKFGTILASASYDGHVIVWR-ETGGVWSELMDHTAHQASVNAVSWAPHE 111


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 622 PKPIFIAFRISPLSASISQANSPPSLLFLTYFPFSITDLRHHKSP 488
           PKP+F A ++ PL+   +     P     T FP++ T       P
Sbjct: 170 PKPLFSALQVYPLATIFNCVAGLPQGFESTVFPWNKTSSTFELDP 214


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 125 DFKGAWSNDTLGHQTALYAPSWSPK 199
           DF+G++ ND    QT L   S+ PK
Sbjct: 41  DFRGSYLNDKSSFQTPLRNGSYQPK 65


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 513 LICVIISHQIAGCRIPHVWSLSN 445
           L+CV+    ++ C  P VW+LS+
Sbjct: 67  LLCVLEQKHLSECVAPFVWTLSS 89


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 246 VSSQKAGCRCCYVRTW 293
           VS+   GC CCY R +
Sbjct: 66  VSNHNVGCSCCYFRQY 81


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 616 PIFIAFRISPLSASISQANSPPSL 545
           P F A +  PL + +SQ+N PP L
Sbjct: 266 PSFAAPQAHPLPSHLSQSNVPPQL 289


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 592 SPLSASISQANSPPSLLFLTYFPFSITDL 506
           +P+ +S+SQAN+P + L     P S+ +L
Sbjct: 515 NPIVSSVSQANAPKNALHSMPSPTSLANL 543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,876
Number of Sequences: 5004
Number of extensions: 67372
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)